Non-Coding RNA Search

Ss1.1-rmas911b_o9.5

Sequence:


               
               GGTCTCATCTTAGTTTGGGAAGAGTCCTTCCTTTGGACTTTCTCTAAGCTGGGAAGAGGA
GGATGGTGGCGAAAAGGACATCCTCTTGGATTGAGCTCCTTGTCTGTCCCTAGGCTCTGA
CGCCTTTCATCTGCCCATCCCGGGCTCCTCCTTGCTGGAGAAAACAGTGGAGAGAAGTCA
TTCCTGGTTCTACCCCCTCTCTTGGCTCCAACCTCATTGGGGTTTGGGTTAAGTGTGAAG
CTTTGGCTAAAATCCTTGGCTTGCCTGAGAGCGCTGGCACTAAGAAGCTGGGATTTTACA
AGGAAGGAGAAGGACCCAGAAACTTCAAGAGAGATGCTTGGGTAGATGTGGATTTTTTCC
ATTGCCTTGCCCCTGACCCAAGCTGGGCCCGTGTCCGGTACGTTTGCAGGCAGCATCTCT
AGGGTAAAATCTTGGAGGAATGATGAGGGGAGGAGTCTTTCTGGACTGTTGGTGGTCTCA
GCAGGATCCTTTCTGTGCCATACCACACAGCATCTTTAGCTCTGCAGGGCAAGGCCAGTG
CTTCCTCCCCAGGGTCCCCCAGGAGAAACAGCGCTCTTCTCTTCCCCCAGGTGACCACGC
TGTGGTCTCCCTCCTGCACCCCCCCACTCCATCTGCCCGCCCCAGTAGGAGGGTTGAGAA
CCTCTCTTCCTGACTCTCCTCCTCCAACCCTTGTCTCTAGGCTGTGGGACAATCTTCCCA
TCCACCCCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTCATCTTAGTTTGGGAAGAGTCCTTCCTTTGGACTTTCTCTAAGCTGGGAAGAGGA
GGATGGTGGCGAAAAGGACATCCTCTTGGATTGAGCTCCTTGTCTGTCCCTAGGCTCTGA
CGCCTTTCATCTGCCCATCCCGGGCTCCTCCTTGCTGGAGAAAACAGTGGAGAGAAGTCA
TTCCTGGTTCTACCCCCTCTCTTGGCTCCAACCTCATTGGGGTTTGGGTTAAGTGTGAAG
CTTTGGCTAAAATCCTTGGCTTGCCTGAGAGCGCTGGCACTAAGAAGCTGGGATTTTACA
AGGAAGGAGAAGGACCCAGAAACTTCAAGAGAGATGCTTGGGTAGATGTGGATTTTTTCC
ATTGCCTTGCCCCTGACCCAAGCTGGGCCCGTGTCCGGTACGTTTGCAGGCAGCATCTCT
AGGGTAAAATCTTGGAGGAATGATGAGGGGAGGAGTCTTTCTGGACTGTTGGTGGTCTCA
GCAGGATCCTTTCTGTGCCATACCACACAGCATCTTTAGCTCTGCAGGGCAAGGCCAGTG
CTTCCTCCCCAGGGTCCCCCAGGAGAAACAGCGCTCTTCTCTTCCCCCAGGTGACCACGC
TGTGGTCTCCCTCCTGCACCCCCCCACTCCATCTGCCCGCCCCAGTAGGAGGGTTGAGAA
CCTCTCTTCCTGACTCTCCTCCTCCAACCCTTGTCTCTAGGCTGTGGGACAATCTTCCCA
TCCACCCCTTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               390-731, - strand, RNAz p=0.999937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-731, - strand, RNAz p=0.999937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-731, gnl|bosTau2|chr15 (19028562-19029271)
               

               
               1-731, gnl|Hg17|chr11 (123001951-123002648)
               

               
               1-731, gnl|Mm7|chr9 (40224880-40224202)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-731, gnl|bosTau2|chr15 (19028562-19029271)
               

               
               1-731, gnl|Hg17|chr11 (123001951-123002648)
               

               
               1-731, gnl|Mm7|chr9 (40224880-40224202)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

	1-731, gnl\|bosTau2\|chr15 (19028562-19029271)
	1-731, gnl\|Hg17\|chr11 (123001951-123002648)
	1-731, gnl\|Mm7\|chr9 (40224880-40224202)