Ss1.1-rmas918b_a2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGTTTAGGTCCAAGCTGCAGCCGCTGACTGGTAGCGAGGACTTGAGTGGAACATGGC TCGGCCGTACATTTGCCTTCTGGCCCTGGCGGCTATGCTGCTGCTAGGTATTGCCACCAT CTCCAGATCGAGGGGCCTACGGGACAAGGCGCATCAGAGTGCGCCGCGAATACCTTCTCA GTTCAGCCAAGAAGAGCGCGTCGCGATGAAGGAAGCGCTAAAAGGTGCCATCCAGATTCC AACAGTGTCTTTCAGCCCCAAGGAGCTCAACACGACAGCCCTGGCTGAGTTTGGAGAATA CATTCGTAAAGTCTTCCCTACTGTGTTCAAAACCAGCTTCATCCGGCATGAAGTCGTGGG AGAGTATAGCCACCTGTTCACTGTCCACGGCTCGGACCCCAGCCTACAGCCCTACATGCT CCTAGCTCACATTGATGTGGTGCCTGCCCCTGATGAAGGCTGGGACGTGCCCCCTTTCTC TGGGCTGGAACGTAATGGCTTTATCTACGGTCGAGGCACAATAGACAACAAGAACTCTCT TATGGGAATCCTGCAGGCCTTGGAACTTCTGCTCATCAGAAACTACATCCCTCGAAGATC TTTCTTCATTGCTCTGGGCCATGATGAGGAGGTGATGGGGGTCAACGGGGCTCAGAAGAT CTCAGCCCTTCTACAGGCAAGGGGCGTCCAGCTAGCCTTCATTGTGGATGAGGGGAGTTT CATCTTTGATGGTTTCATTCCCGGCCTTAAGAACCCCTTTGCCATGGTTGCAGTCTCCCA GAAGGGCTTAATTAACCTCATGCTGCAAGTAAACACGACTCCAGGCCACTCTTCAGCTCC TCCAAAGGAAACTAGCATTGGTATCCTTACAGCCGCTGTCAACCGACTGGAACAGACACC AATGCCAAACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGTTTAGGTCCAAGCTGCAGCCGCTGACTGGTAGCGAGGACTTGAGTGGAACATGGC TCGGCCGTACATTTGCCTTCTGGCCCTGGCGGCTATGCTGCTGCTAGGTATTGCCACCAT CTCCAGATCGAGGGGCCTACGGGACAAGGCGCATCAGAGTGCGCCGCGAATACCTTCTCA GTTCAGCCAAGAAGAGCGCGTCGCGATGAAGGAAGCGCTAAAAGGTGCCATCCAGATTCC AACAGTGTCTTTCAGCCCCAAGGAGCTCAACACGACAGCCCTGGCTGAGTTTGGAGAATA CATTCGTAAAGTCTTCCCTACTGTGTTCAAAACCAGCTTCATCCGGCATGAAGTCGTGGG AGAGTATAGCCACCTGTTCACTGTCCACGGCTCGGACCCCAGCCTACAGCCCTACATGCT CCTAGCTCACATTGATGTGGTGCCTGCCCCTGATGAAGGCTGGGACGTGCCCCCTTTCTC TGGGCTGGAACGTAATGGCTTTATCTACGGTCGAGGCACAATAGACAACAAGAACTCTCT TATGGGAATCCTGCAGGCCTTGGAACTTCTGCTCATCAGAAACTACATCCCTCGAAGATC TTTCTTCATTGCTCTGGGCCATGATGAGGAGGTGATGGGGGTCAACGGGGCTCAGAAGAT CTCAGCCCTTCTACAGGCAAGGGGCGTCCAGCTAGCCTTCATTGTGGATGAGGGGAGTTT CATCTTTGATGGTTTCATTCCCGGCCTTAAGAACCCCTTTGCCATGGTTGCAGTCTCCCA GAAGGGCTTAATTAACCTCATGCTGCAAGTAAACACGACTCCAGGCCACTCTTCAGCTCC TCCAAAGGAAACTAGCATTGGTATCCTTACAGCCGCTGTCAACCGACTGGAACAGACACC AATGCCAAACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 649-766, + strand, RNAz p=0.775532 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 649-766, + strand, RNAz p=0.775532 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 3-227, gnl|bosTau2|chr16 (445243-445019) | |
| 3-227, gnl|Hg17|chr1 (202550910-202550686) | |
| 3-227, gnl|Mm7|chr1 (131692846-131693061) | |
| 310-545, gnl|bosTau2|chr16 (440739-440504) | |
| 310-545, gnl|canFam2|chr38 (5265591-5265873) | |
| 310-545, gnl|danRer3|chr23 (21789464-21789722) | |
| 310-545, gnl|echTel1|scaffold_287743 (86413-86148) | |
| 310-545, gnl|fr1|chrUn (207161758-207161501) | |
| 310-545, gnl|galGal2|chr26 (915947-916233) | |
| 310-545, gnl|hg17|chr1 (202546105-202546382) | |
| 310-545, gnl|Hg17|chr1 (202546344-202546109) | |
| 310-545, gnl|loxAfr1|scaffold_15068 (5798-6079) | |
| 310-545, gnl|mm7|chr1 (131696805-131696520) | |
| 310-545, gnl|Mm7|chr1 (131696564-131696799) | |
| 310-545, gnl|monDom2|scaffold_13 (7747964-7748239) | |
| 310-545, gnl|oryCun1|scaffold_213245 (8905-8622) | |
| 310-545, gnl|panTro1|chr1 (185507205-185507482) | |
| 310-545, gnl|rheMac2|chr1 (164572879-164572602) | |
| 310-545, gnl|rn3|chr13 (44752165-44751880) | |
| 310-545, gnl|tetNig1|chr9 (8239353-8239618) | |
| 310-545, gnl|xenTro1|scaffold_1212 (236993-237247) | |
| 638-766, gnl|bosTau2|chr16 (438625-438497) | |
| 638-766, gnl|canFam2|chr38 (5263917-5264070) | |
| 638-766, gnl|dasNov1|scaffold_277112 (448-601) | |
| 638-766, gnl|echTel1|scaffold_287743 (87646-87496) | |
| 638-766, gnl|galGal2|chr26 (914411-914556) | |
| 638-766, gnl|hg17|chr1 (202544864-202545014) | |
| 638-766, gnl|Hg17|chr1 (202544996-202544871) | |
| 638-766, gnl|loxAfr1|scaffold_15068 (4633-4783) | |
| 638-766, gnl|mm7|chr1 (131697916-131697763) | |
| 638-766, gnl|Mm7|chr1 (131697779-131697907) | |
| 638-766, gnl|monDom2|scaffold_13 (7747078-7747230) | |
| 638-766, gnl|oryCun1|scaffold_213245 (10127-9974) | |
| 638-766, gnl|panTro1|chr1 (185505963-185506113) | |
| 638-766, gnl|rheMac2|chr1 (164574121-164573971) | |
| 638-766, gnl|rn3|chr13 (44753399-44753246) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-227, gnl|bosTau2|chr16 (445243-445019) | |
| 3-227, gnl|Hg17|chr1 (202550910-202550686) | |
| 3-227, gnl|Mm7|chr1 (131692846-131693061) | |
| 310-545, gnl|bosTau2|chr16 (440739-440504) | |
| 310-545, gnl|canFam2|chr38 (5265591-5265873) | |
| 310-545, gnl|danRer3|chr23 (21789464-21789722) | |
| 310-545, gnl|echTel1|scaffold_287743 (86413-86148) | |
| 310-545, gnl|fr1|chrUn (207161758-207161501) | |
| 310-545, gnl|galGal2|chr26 (915947-916233) | |
| 310-545, gnl|hg17|chr1 (202546105-202546382) | |
| 310-545, gnl|Hg17|chr1 (202546344-202546109) | |
| 310-545, gnl|loxAfr1|scaffold_15068 (5798-6079) | |
| 310-545, gnl|mm7|chr1 (131696805-131696520) | |
| 310-545, gnl|Mm7|chr1 (131696564-131696799) | |
| 310-545, gnl|monDom2|scaffold_13 (7747964-7748239) | |
| 310-545, gnl|oryCun1|scaffold_213245 (8905-8622) | |
| 310-545, gnl|panTro1|chr1 (185507205-185507482) | |
| 310-545, gnl|rheMac2|chr1 (164572879-164572602) | |
| 310-545, gnl|rn3|chr13 (44752165-44751880) | |
| 310-545, gnl|tetNig1|chr9 (8239353-8239618) | |
| 310-545, gnl|xenTro1|scaffold_1212 (236993-237247) | |
| 638-766, gnl|bosTau2|chr16 (438625-438497) | |
| 638-766, gnl|canFam2|chr38 (5263917-5264070) | |
| 638-766, gnl|dasNov1|scaffold_277112 (448-601) | |
| 638-766, gnl|echTel1|scaffold_287743 (87646-87496) | |
| 638-766, gnl|galGal2|chr26 (914411-914556) | |
| 638-766, gnl|hg17|chr1 (202544864-202545014) | |
| 638-766, gnl|Hg17|chr1 (202544996-202544871) | |
| 638-766, gnl|loxAfr1|scaffold_15068 (4633-4783) | |
| 638-766, gnl|mm7|chr1 (131697916-131697763) | |
| 638-766, gnl|Mm7|chr1 (131697779-131697907) | |
| 638-766, gnl|monDom2|scaffold_13 (7747078-7747230) | |
| 638-766, gnl|oryCun1|scaffold_213245 (10127-9974) | |
| 638-766, gnl|panTro1|chr1 (185505963-185506113) | |
| 638-766, gnl|rheMac2|chr1 (164574121-164573971) | |
| 638-766, gnl|rn3|chr13 (44753399-44753246) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) |