Non-Coding RNA Search

Ss1.1-rmas918b_m1.5

Sequence:


               
               ACAGATACTGGCAGCTGCTGCAGCTGAGCGAGATGTGGTTTATTTCACCTTTGGGGACTC
AGAATTGATGAGAGACATTTACAGCATGCACACTTTCCTTACTGAAAGGAAACTGACCGT
TGGAGAAGTGTATAAGCTGCTGCTACGATATTATAATGAAGAGTGCAGAAACTGTTCCAC
CCCTGGACCAGACATCAAGCTTTATCCATTCATATACCATGCTGTTGAGTTCTGTGCAGA
AACCACCAACCAGCCAGGACAAAGGACTGGAGCCTGAGGAGCCAAGTGACTAGAACCTCC
TTGCACCTTTCACCAGAAACATCTTTTTTGAACTGTCAGCTGTAACATACAAAATGACTT
ATGTGTATATAATCCACATCTCTAAGCAAGGATGCAGTCTCTTTCACATATATGCAGTTG
TCAGTTTGTTCATCCAAACCCCCTCCATCCTGACTTACATTGATTCAGATATATCGTTTT
TGATTTCTCTGTCTTCATTTTTCAATTTTTCTTTTGCCCATCAGATTTCTTGTGAAATTT
TATGAACGGTTGTGCTCAGCCTGTTAGGTCTTTTTTTCATGCCTATATATTATAAAACTT
GCCTCTGCAGCCAGCAGATGCCAGTGATACCAGGGGAGAAGTTGAAATCCTAGAATCTGT
GTAACTGGGTCTGCTAAAGGTCTCCTTGTGAACCTTCCCCCACCCCTTGTTATAGTGCAT
TGATGGAGTTTTTGATTTTTGAAAATTTAAGAGTTGGGATTTTTTTCATATATGTTATAT
AATGTAGATCTCCTAGGTTAAAACAGTTTTGTATTTAAGACAGAATTTCCAGAAAGTTAT
TTTAAGACATCACCTTTACCTGGAATGATCTGTCCCCTTTTCCTCTGGTCATTACTGATG
CTGTTTTTGGAGACTGATCAAGATGGAAGGAAATGTAGAATAAAAGAGTTTCCCAAATGG
TGTTTGAAAAACAAATAAGATTTAAGAGACTTGAAGGATCTTTTGATTCTTGGGGTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGATACTGGCAGCTGCTGCAGCTGAGCGAGATGTGGTTTATTTCACCTTTGGGGACTC
AGAATTGATGAGAGACATTTACAGCATGCACACTTTCCTTACTGAAAGGAAACTGACCGT
TGGAGAAGTGTATAAGCTGCTGCTACGATATTATAATGAAGAGTGCAGAAACTGTTCCAC
CCCTGGACCAGACATCAAGCTTTATCCATTCATATACCATGCTGTTGAGTTCTGTGCAGA
AACCACCAACCAGCCAGGACAAAGGACTGGAGCCTGAGGAGCCAAGTGACTAGAACCTCC
TTGCACCTTTCACCAGAAACATCTTTTTTGAACTGTCAGCTGTAACATACAAAATGACTT
ATGTGTATATAATCCACATCTCTAAGCAAGGATGCAGTCTCTTTCACATATATGCAGTTG
TCAGTTTGTTCATCCAAACCCCCTCCATCCTGACTTACATTGATTCAGATATATCGTTTT
TGATTTCTCTGTCTTCATTTTTCAATTTTTCTTTTGCCCATCAGATTTCTTGTGAAATTT
TATGAACGGTTGTGCTCAGCCTGTTAGGTCTTTTTTTCATGCCTATATATTATAAAACTT
GCCTCTGCAGCCAGCAGATGCCAGTGATACCAGGGGAGAAGTTGAAATCCTAGAATCTGT
GTAACTGGGTCTGCTAAAGGTCTCCTTGTGAACCTTCCCCCACCCCTTGTTATAGTGCAT
TGATGGAGTTTTTGATTTTTGAAAATTTAAGAGTTGGGATTTTTTTCATATATGTTATAT
AATGTAGATCTCCTAGGTTAAAACAGTTTTGTATTTAAGACAGAATTTCCAGAAAGTTAT
TTTAAGACATCACCTTTACCTGGAATGATCTGTCCCCTTTTCCTCTGGTCATTACTGATG
CTGTTTTTGGAGACTGATCAAGATGGAAGGAAATGTAGAATAAAAGAGTTTCCCAAATGG
TGTTTGAAAAACAAATAAGATTTAAGAGACTTGAAGGATCTTTTGATTCTTGGGGTGTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               122-1020, gnl|bosTau2|chr28 (34107781-34106913)
               

               
               122-1020, gnl|Hg17|chr10 (50697547-50696617)
               

               
               122-1020, gnl|Mm7|chr14 (29725836-29726703)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-1020, gnl|bosTau2|chr28 (34107781-34106913)
               

               
               122-1020, gnl|Hg17|chr10 (50697547-50696617)
               

               
               122-1020, gnl|Mm7|chr14 (29725836-29726703)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               spl (0.143184)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               spl (0.143184)

	122-1020, gnl\|bosTau2\|chr28 (34107781-34106913)
	122-1020, gnl\|Hg17\|chr10 (50697547-50696617)
	122-1020, gnl\|Mm7\|chr14 (29725836-29726703)

	ece (0.229305)
	mas (0.210305)
	fco (0.157208)
	lun (0.150489)
	lin (0.145603)
	spl (0.143184)