Non-Coding RNA Search

Ss1.1-rmas920b_d11.5

Sequence:


               
               CGGAATCTCCGTGCTCAAGGCTACAAGCTGACAATAGACGCTCTCCCCTTCCAGGCGGCT
CGGGTCTCTGGAGACATAGCCAGTGATTTTCTCTACAGACACGACTTTGTGAAGGAGCGA
GGGAGGCTGATCGGAGCCCAGAGTGTGAGCGACGACCCCCGGCTCCGGCACTGCCGGCGG
GTGGGCCAGCTGCAGAGTGAGCTTCAGTACAGGAGGCAGGCGGTGGGCAGCCGAGCCCAC
TGCCACCTGCCGATGGACATGGTGCCCCTGGTCCACGCCAGGAAGGCCCAGGCCCTGGCC
AGCGACCACGACTACAGGACACGGTGCCATGCGTTCACGGCGCTACCCGAGGACCTGAAG
ATGGCCTGGGCCAAGAAGGCTCACGCCCTGCAGAGCGAGTCACGCTACAAGTCAGACCTG
AGGAGCATGAAGGGGACAGGATGGCTGGCGCTGAGTTCCCCACAGATCGAGAGCGCAAAG
AAAGCTGGAGAACTCATCAGCGAGACCAAATACCGTAGAAAACCAGACACCATCAAGTTT
ACCGCGGTGGTTGACTCTCCGGACCTAGTTCATGCCAAGAACAGCTACGTGCACTGCAAT
GAGCGCCTGTACAGGTCCGGGGACGCAGAATCCCTGCACCGATACACCCTGGTCCCCGAC
CACCCCGATTTCGCCAGAGCCCGCCTCAATGCGCTGCATCTGAGTGATAAAGTCTACAGA
AACTCTTGGGAGCAGACCCGGGCTGGCGGCTATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAATCTCCGTGCTCAAGGCTACAAGCTGACAATAGACGCTCTCCCCTTCCAGGCGGCT
CGGGTCTCTGGAGACATAGCCAGTGATTTTCTCTACAGACACGACTTTGTGAAGGAGCGA
GGGAGGCTGATCGGAGCCCAGAGTGTGAGCGACGACCCCCGGCTCCGGCACTGCCGGCGG
GTGGGCCAGCTGCAGAGTGAGCTTCAGTACAGGAGGCAGGCGGTGGGCAGCCGAGCCCAC
TGCCACCTGCCGATGGACATGGTGCCCCTGGTCCACGCCAGGAAGGCCCAGGCCCTGGCC
AGCGACCACGACTACAGGACACGGTGCCATGCGTTCACGGCGCTACCCGAGGACCTGAAG
ATGGCCTGGGCCAAGAAGGCTCACGCCCTGCAGAGCGAGTCACGCTACAAGTCAGACCTG
AGGAGCATGAAGGGGACAGGATGGCTGGCGCTGAGTTCCCCACAGATCGAGAGCGCAAAG
AAAGCTGGAGAACTCATCAGCGAGACCAAATACCGTAGAAAACCAGACACCATCAAGTTT
ACCGCGGTGGTTGACTCTCCGGACCTAGTTCATGCCAAGAACAGCTACGTGCACTGCAAT
GAGCGCCTGTACAGGTCCGGGGACGCAGAATCCCTGCACCGATACACCCTGGTCCCCGAC
CACCCCGATTTCGCCAGAGCCCGCCTCAATGCGCTGCATCTGAGTGATAAAGTCTACAGA
AACTCTTGGGAGCAGACCCGGGCTGGCGGCTATGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-399, - strand, RNAz p=0.705789

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-399, - strand, RNAz p=0.705789

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               224-370, - strand, RNAmicro p=0.985047

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               224-370, - strand, RNAmicro p=0.985047

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               88-399, gnl|bosTau2|chr26 (22951856-22952167)
               

               
               88-399, gnl|Hg17|chr10 (115354669-115354358)
               

               
               88-399, gnl|Mm7|chr19 (56250312-56250001)
               


               
               503-603, gnl|bosTau2|chr26 (22959930-22960030)
               

               
               503-603, gnl|canFam2|chr28 (27531063-27531169)
               

               
               503-603, gnl|danRer3|chr23 (32882294-32882400)
               

               
               503-603, gnl|dasNov1|scaffold_1703 (57589-57695)
               

               
               503-603, gnl|echTel1|scaffold_297528 (69565-69459)
               

               
               503-603, gnl|fr1|chrUn (213637590-213637484)
               

               
               503-603, gnl|galGal2|chr6 (26513352-26513458)
               

               
               503-603, gnl|hg17|chr10 (115346830-115346936)
               

               
               503-603, gnl|Hg17|chr10 (115346935-115346835)
               

               
               503-603, gnl|loxAfr1|scaffold_38205 (18412-18518)
               

               
               503-603, gnl|mm7|chr19 (56243471-56243577)
               

               
               503-603, gnl|Mm7|chr19 (56243576-56243476)
               

               
               503-603, gnl|monDom2|scaffold_14 (48634602-48634496)
               

               
               503-603, gnl|oryCun1|scaffold_214509 (377814-377920)
               

               
               503-603, gnl|panTro1|chr8 (117485722-117485828)
               

               
               503-603, gnl|rheMac2|chr9 (113263907-113264013)
               

               
               503-603, gnl|rn3|chr1 (262810163-262810269)
               

               
               503-603, gnl|tetNig1|chr2 (6383244-6383139)
               

               
               503-603, gnl|xenTro1|scaffold_494 (801952-802032)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-399, gnl|bosTau2|chr26 (22951856-22952167)
               

               
               88-399, gnl|Hg17|chr10 (115354669-115354358)
               

               
               88-399, gnl|Mm7|chr19 (56250312-56250001)
               


               
               503-603, gnl|bosTau2|chr26 (22959930-22960030)
               

               
               503-603, gnl|canFam2|chr28 (27531063-27531169)
               

               
               503-603, gnl|danRer3|chr23 (32882294-32882400)
               

               
               503-603, gnl|dasNov1|scaffold_1703 (57589-57695)
               

               
               503-603, gnl|echTel1|scaffold_297528 (69565-69459)
               

               
               503-603, gnl|fr1|chrUn (213637590-213637484)
               

               
               503-603, gnl|galGal2|chr6 (26513352-26513458)
               

               
               503-603, gnl|hg17|chr10 (115346830-115346936)
               

               
               503-603, gnl|Hg17|chr10 (115346935-115346835)
               

               
               503-603, gnl|loxAfr1|scaffold_38205 (18412-18518)
               

               
               503-603, gnl|mm7|chr19 (56243471-56243577)
               

               
               503-603, gnl|Mm7|chr19 (56243576-56243476)
               

               
               503-603, gnl|monDom2|scaffold_14 (48634602-48634496)
               

               
               503-603, gnl|oryCun1|scaffold_214509 (377814-377920)
               

               
               503-603, gnl|panTro1|chr8 (117485722-117485828)
               

               
               503-603, gnl|rheMac2|chr9 (113263907-113264013)
               

               
               503-603, gnl|rn3|chr1 (262810163-262810269)
               

               
               503-603, gnl|tetNig1|chr2 (6383244-6383139)
               

               
               503-603, gnl|xenTro1|scaffold_494 (801952-802032)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.42061)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)

	88-399, gnl\|bosTau2\|chr26 (22951856-22952167)
	88-399, gnl\|Hg17\|chr10 (115354669-115354358)
	88-399, gnl\|Mm7\|chr19 (56250312-56250001)

	503-603, gnl\|bosTau2\|chr26 (22959930-22960030)
	503-603, gnl\|canFam2\|chr28 (27531063-27531169)
	503-603, gnl\|danRer3\|chr23 (32882294-32882400)
	503-603, gnl\|dasNov1\|scaffold_1703 (57589-57695)
	503-603, gnl\|echTel1\|scaffold_297528 (69565-69459)
	503-603, gnl\|fr1\|chrUn (213637590-213637484)
	503-603, gnl\|galGal2\|chr6 (26513352-26513458)
	503-603, gnl\|hg17\|chr10 (115346830-115346936)
	503-603, gnl\|Hg17\|chr10 (115346935-115346835)
	503-603, gnl\|loxAfr1\|scaffold_38205 (18412-18518)
	503-603, gnl\|mm7\|chr19 (56243471-56243577)
	503-603, gnl\|Mm7\|chr19 (56243576-56243476)
	503-603, gnl\|monDom2\|scaffold_14 (48634602-48634496)
	503-603, gnl\|oryCun1\|scaffold_214509 (377814-377920)
	503-603, gnl\|panTro1\|chr8 (117485722-117485828)
	503-603, gnl\|rheMac2\|chr9 (113263907-113264013)
	503-603, gnl\|rn3\|chr1 (262810163-262810269)
	503-603, gnl\|tetNig1\|chr2 (6383244-6383139)
	503-603, gnl\|xenTro1\|scaffold_494 (801952-802032)