Non-Coding RNA Search

Ss1.1-rmas921b_l1.5

Sequence:


               
               GAGGCGGGCCGCTCCCGGGCCCACTACCTCCACCACTTCTCCTTCAAGACACTGCACTTC
CTGCTGACCGAGGCCCTGCAGCTGCTGAGCAGCGGGCAGCGTCCACCGCAGTGCCACCAG
GTGTTCCGAGGAGTGCAGGGCCTGCGCTTCCGGCCCGCGGGGCCCGGGGCCACCGTCAGG
CTGGGCGGCTTCGCCTCTGCGTCCCTGCAGAATGCCGCGGCCCAGCAGTTTGGGGAAGAC
ACCTTCTTTGGCATCTGGACCTGCCTCGGGGCCCCGATCAAGGGCTACTCCTTCTTCCCC
GGGGAGGAGGAGGTGCTGATCCCTCCCTTCGAGACCTTCCAGGTGATCAACGCCAGCAGG
CCAGCCCAGGGCCCTGCCCGCATCTACCTGCGGGCCCTGGGCAAGCGGAGCACCTACAAC
TGCGAGTACATCAAAGACAAACAATGCAAGTCTCGCCCCTGCCGTCTGGATAACTCAGCT
ATGGGTCGGGGCCCCCTTTCTGCACTCTGGTCCCTTCTACTGCTGCTCTGGTTCCTTGTT
GGGGGAGCCTTTCCAGAGAGTCCAGGCCTTCTCTGATCTCTACCGAACAGCTCTGCCTGC
TGCCCCTGCCCAACGCGAGGACATCAGGCACATGTGTGCTTTAAGCGTGGCCAAGATCCC
TGGTGACTCCACCGGCAGGGAACTCTGGGACATTGGCAGCTGCCAGGCCTGCTGGTGGGG
AGAGAAGACCGTGGGGACTGAGCCTCACCCAGGGCCCTGGGAGTAGGGGGCTGAATGCAG
GACAGGGAAGAAAAGCACTTGGCCACGGCTCGGCCATGGCTCGTGCCCATGTTACTCAGA
TGCCTCCCGCCTCCCTCTGGACTGCTCCCACTCGCTCCTCCGGGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGGGCCGCTCCCGGGCCCACTACCTCCACCACTTCTCCTTCAAGACACTGCACTTC
CTGCTGACCGAGGCCCTGCAGCTGCTGAGCAGCGGGCAGCGTCCACCGCAGTGCCACCAG
GTGTTCCGAGGAGTGCAGGGCCTGCGCTTCCGGCCCGCGGGGCCCGGGGCCACCGTCAGG
CTGGGCGGCTTCGCCTCTGCGTCCCTGCAGAATGCCGCGGCCCAGCAGTTTGGGGAAGAC
ACCTTCTTTGGCATCTGGACCTGCCTCGGGGCCCCGATCAAGGGCTACTCCTTCTTCCCC
GGGGAGGAGGAGGTGCTGATCCCTCCCTTCGAGACCTTCCAGGTGATCAACGCCAGCAGG
CCAGCCCAGGGCCCTGCCCGCATCTACCTGCGGGCCCTGGGCAAGCGGAGCACCTACAAC
TGCGAGTACATCAAAGACAAACAATGCAAGTCTCGCCCCTGCCGTCTGGATAACTCAGCT
ATGGGTCGGGGCCCCCTTTCTGCACTCTGGTCCCTTCTACTGCTGCTCTGGTTCCTTGTT
GGGGGAGCCTTTCCAGAGAGTCCAGGCCTTCTCTGATCTCTACCGAACAGCTCTGCCTGC
TGCCCCTGCCCAACGCGAGGACATCAGGCACATGTGTGCTTTAAGCGTGGCCAAGATCCC
TGGTGACTCCACCGGCAGGGAACTCTGGGACATTGGCAGCTGCCAGGCCTGCTGGTGGGG
AGAGAAGACCGTGGGGACTGAGCCTCACCCAGGGCCCTGGGAGTAGGGGGCTGAATGCAG
GACAGGGAAGAAAAGCACTTGGCCACGGCTCGGCCATGGCTCGTGCCCATGTTACTCAGA
TGCCTCCCGCCTCCCTCTGGACTGCTCCCACTCGCTCCTCCGGGAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15667374|emb|CAC69964.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15667374|emb|CAC69964.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-436, - strand, RNAz p=0.803325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-436, - strand, RNAz p=0.803325

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-436, gnl|bosTau2|chr15 (32800163-32800598)
               

               
               1-436, gnl|Hg17|chr11 (3637734-3638169)
               

               
               1-436, gnl|Mm7|chr7 (98153099-98153531)
               


               
               476-775, gnl|bosTau2|chr15 (32803036-32803344)
               

               
               476-775, gnl|Hg17|chr11 (3641895-3642205)
               

               
               476-775, gnl|Mm7|chr7 (98156789-98157080)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-436, gnl|bosTau2|chr15 (32800163-32800598)
               

               
               1-436, gnl|Hg17|chr11 (3637734-3638169)
               

               
               1-436, gnl|Mm7|chr7 (98153099-98153531)
               


               
               476-775, gnl|bosTau2|chr15 (32803036-32803344)
               

               
               476-775, gnl|Hg17|chr11 (3641895-3642205)
               

               
               476-775, gnl|Mm7|chr7 (98156789-98157080)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.42061)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)

	1-436, gnl\|bosTau2\|chr15 (32800163-32800598)
	1-436, gnl\|Hg17\|chr11 (3637734-3638169)
	1-436, gnl\|Mm7\|chr7 (98153099-98153531)

	476-775, gnl\|bosTau2\|chr15 (32803036-32803344)
	476-775, gnl\|Hg17\|chr11 (3641895-3642205)
	476-775, gnl\|Mm7\|chr7 (98156789-98157080)