Ss1.1-rmas922b_f7.5
|
AGACTGGGCTATATGTATGTGCTCTAGGCCTGGGGAGCTATTTAGGGGGAGTACAGACCC
ACCTCCATTGGGGGTGTCATGAAGGCAGTCAGGCCTGGGCTACACAATCACCTGTCCTAG
CTGGTGAGCATCACTTAGCTGGGGAAAGTGCCACCTGGGACGTTGCAGGTGTCAGACCAG
CAGAGTTCCCAGCTGAAAACTAGACCGATATGCTCTATTGGTTGTTCCTTGCTTGCAATA
TGCTTGCTATTCATTAATGTCCTAACGATCAGAGACTCTCCTTCTGACCGATTGCTATGT
TTACATAACACGTACTCGTGCATCTTTTCCCGGAGCCAAGATATGTATGCATATATGAAG
AAAGCATTCTTTCCTACATAGCCCAGCACATTGCAATGTTTGCATTCAAACAAGAAAATG
CTAAAGGTGGAAAAAGATCACATTGGATGAAATAAATCCCCAAGTCTGTTGTGGTTAGGA
ATCCAGTTATCCCACCAGTGAAGGACCCACGTGACTTTCTTACTTGGTCTTTTCATTTGA
GAAAACACGAGCCTTGATTTATGGTAAATAAAAACAATGGTGATAAGCATTTGAACCTTA
AACATCTACAAGTTTACATTCCTACTTAAGAGGCCATGGAAATAGCCGTGGACCCGTCTT
TCAGGGACTAAAGGAAATTAGGCCAGGCCTAAAATGCAGCAGACCTTTTGTAAGAGAAAA
TTTCAATAAAGCTGAAAACATGTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGACTGGGCTATATGTATGTGCTCTAGGCCTGGGGAGCTATTTAGGGGGAGTACAGACCC
ACCTCCATTGGGGGTGTCATGAAGGCAGTCAGGCCTGGGCTACACAATCACCTGTCCTAG
CTGGTGAGCATCACTTAGCTGGGGAAAGTGCCACCTGGGACGTTGCAGGTGTCAGACCAG
CAGAGTTCCCAGCTGAAAACTAGACCGATATGCTCTATTGGTTGTTCCTTGCTTGCAATA
TGCTTGCTATTCATTAATGTCCTAACGATCAGAGACTCTCCTTCTGACCGATTGCTATGT
TTACATAACACGTACTCGTGCATCTTTTCCCGGAGCCAAGATATGTATGCATATATGAAG
AAAGCATTCTTTCCTACATAGCCCAGCACATTGCAATGTTTGCATTCAAACAAGAAAATG
CTAAAGGTGGAAAAAGATCACATTGGATGAAATAAATCCCCAAGTCTGTTGTGGTTAGGA
ATCCAGTTATCCCACCAGTGAAGGACCCACGTGACTTTCTTACTTGGTCTTTTCATTTGA
GAAAACACGAGCCTTGATTTATGGTAAATAAAAACAATGGTGATAAGCATTTGAACCTTA
AACATCTACAAGTTTACATTCCTACTTAAGAGGCCATGGAAATAGCCGTGGACCCGTCTT
TCAGGGACTAAAGGAAATTAGGCCAGGCCTAAAATGCAGCAGACCTTTTGTAAGAGAAAA
TTTCAATAAAGCTGAAAACATGTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
13-250, gnl|bosTau2|chr8 (6028082-6028323) |
|
13-250, gnl|canFam2|chr25 (32702700-32702005) |
|
13-250, gnl|dasNov1|scaffold_23538 (9600-10297) |
|
13-250, gnl|echTel1|scaffold_314865 (691-1318) |
|
13-250, gnl|hg17|chr8 (27783796-27784511) |
|
13-250, gnl|Hg17|chr8 (27784076-27783797) |
|
13-250, gnl|loxAfr1|scaffold_25464 (9569-10266) |
|
13-250, gnl|mm7|chr14 (60624823-60624188) |
|
13-250, gnl|Mm7|chr14 (60624570-60624820) |
|
13-250, gnl|oryCun1|scaffold_208063 (311395-310700) |
|
13-250, gnl|panTro1|chr7 (28763079-28763781) |
|
13-250, gnl|rheMac2|chr8 (28021719-28022434) |
|
13-250, gnl|rn3|chr15 (45204447-45203803) |
| |
|
293-742, gnl|bosTau2|chr8 (6028325-6028777) |
|
293-742, gnl|Hg17|chr8 (27783795-27783325) |
|
293-742, gnl|Mm7|chr14 (60624822-60625292) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
13-250, gnl|bosTau2|chr8 (6028082-6028323) |
|
13-250, gnl|canFam2|chr25 (32702700-32702005) |
|
13-250, gnl|dasNov1|scaffold_23538 (9600-10297) |
|
13-250, gnl|echTel1|scaffold_314865 (691-1318) |
|
13-250, gnl|hg17|chr8 (27783796-27784511) |
|
13-250, gnl|Hg17|chr8 (27784076-27783797) |
|
13-250, gnl|loxAfr1|scaffold_25464 (9569-10266) |
|
13-250, gnl|mm7|chr14 (60624823-60624188) |
|
13-250, gnl|Mm7|chr14 (60624570-60624820) |
|
13-250, gnl|oryCun1|scaffold_208063 (311395-310700) |
|
13-250, gnl|panTro1|chr7 (28763079-28763781) |
|
13-250, gnl|rheMac2|chr8 (28021719-28022434) |
|
13-250, gnl|rn3|chr15 (45204447-45203803) |
| |
|
293-742, gnl|bosTau2|chr8 (6028325-6028777) |
|
293-742, gnl|Hg17|chr8 (27783795-27783325) |
|
293-742, gnl|Mm7|chr14 (60624822-60625292) |
|
mas (0.210305) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
isp (0.150376) |
|
ski (0.146735) |
|
ova (0.129132) |
|
ldo (0.0970026) |
|
mas (0.210305) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
isp (0.150376) |
|
ski (0.146735) |
|
ova (0.129132) |
|
ldo (0.0970026) |