Ss1.1-rmas924b_c22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGGGCGCCTGGCAGCAGGCATGGCCGGCTCTCTGGAGGAGCAGATGGCTGGGCTGCGG CAGCAGGAGCAGAACATCATCAACTACAAGAGCAACATCGACCGGCTCGAGGGTGACCAC CAGCTGCTGCAGGAGAGCCTGGTGTTCGACAATAAGCACACCGTGTACAGCATGGAGCAC ATCCGTGTGGGCTGGGAGCAGCTGCTCACCTCCATTGCCCGCACCATCAATGAGGTGGAG AACCAGGTACTGACCCGAGACGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAGTTCCGG GCATCCTTCAACCACTTTGACCGGAAGCGGAACGGTATGATGGAGCCCGACGACTTCCGG GCCTGCCTCATCTCCATGGGCTATGACCTGGGGGAAGTGGAGTTCGCGCGAATCATGACC ATGGTGGACCCCAACGCGGCCGGGGTCGTGACCTTCCAGGCCTTCATCGACTTCATGACC CGAGAGACAGCCGAGACCGACACGGCTGAGCAAGTCGTGGCCTCCTTCAAGATCCTGGCG GGAGACAAGAACTACATCACTGCTGAGGAGCTGCGGCGGGAACTCCCGGCGGAGCAGGCC GAGTACTGCATCCGCCGCATGGCGCCCTACAAGGGGGCCGGGGCTCCGGCTGGAGCCCTG GACTACGTGGCCTTCTCCAGTGCCCTCTACGGGGAGAGTGACCTCTGACCTGGACCCCGA AGTGCTACACGTCCAGAGATGGCTGCCTCCTCTGGCTGATCCCGTCCATCCCCCAGCAGG AGAAGGACCAGCCAAGTGCTTCTGAATAAAGATGCATCGGGGAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGGGCGCCTGGCAGCAGGCATGGCCGGCTCTCTGGAGGAGCAGATGGCTGGGCTGCGG CAGCAGGAGCAGAACATCATCAACTACAAGAGCAACATCGACCGGCTCGAGGGTGACCAC CAGCTGCTGCAGGAGAGCCTGGTGTTCGACAATAAGCACACCGTGTACAGCATGGAGCAC ATCCGTGTGGGCTGGGAGCAGCTGCTCACCTCCATTGCCCGCACCATCAATGAGGTGGAG AACCAGGTACTGACCCGAGACGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAGTTCCGG GCATCCTTCAACCACTTTGACCGGAAGCGGAACGGTATGATGGAGCCCGACGACTTCCGG GCCTGCCTCATCTCCATGGGCTATGACCTGGGGGAAGTGGAGTTCGCGCGAATCATGACC ATGGTGGACCCCAACGCGGCCGGGGTCGTGACCTTCCAGGCCTTCATCGACTTCATGACC CGAGAGACAGCCGAGACCGACACGGCTGAGCAAGTCGTGGCCTCCTTCAAGATCCTGGCG GGAGACAAGAACTACATCACTGCTGAGGAGCTGCGGCGGGAACTCCCGGCGGAGCAGGCC GAGTACTGCATCCGCCGCATGGCGCCCTACAAGGGGGCCGGGGCTCCGGCTGGAGCCCTG GACTACGTGGCCTTCTCCAGTGCCCTCTACGGGGAGAGTGACCTCTGACCTGGACCCCGA AGTGCTACACGTCCAGAGATGGCTGCCTCCTCTGGCTGATCCCGTCCATCCCCCAGCAGG AGAAGGACCAGCCAAGTGCTTCTGAATAAAGATGCATCGGGGAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 170-324, gnl|bosTau2|chr10 (55164312-55164158) | |
| 170-324, gnl|canFam2|chr8 (45755238-45755399) | |
| 170-324, gnl|danRer3|chr13 (38987848-38988008) | |
| 170-324, gnl|dasNov1|scaffold_45991 (1449-1610) | |
| 170-324, gnl|echTel1|scaffold_204200 (125-287) | |
| 170-324, gnl|fr1|chrUn (2849320-2849160) | |
| 170-324, gnl|galGal2|chr5 (25197983-25197824) | |
| 170-324, gnl|hg17|chr14 (68416428-68416589) | |
| 170-324, gnl|Hg17|chr14 (68416586-68416432) | |
| 170-324, gnl|loxAfr1|scaffold_9916 (6196-6357) | |
| 170-324, gnl|mm7|chr12 (78134729-78134890) | |
| 170-324, gnl|Mm7|chr12 (78134887-78134733) | |
| 170-324, gnl|monDom2|scaffold_8 (84921050-84921209) | |
| 170-324, gnl|oryCun1|scaffold_187628 (4466-4305) | |
| 170-324, gnl|panTro1|chr15 (68083112-68083273) | |
| 170-324, gnl|rheMac2|chr7 (131989895-131990056) | |
| 170-324, gnl|rn3|chr6 (103196347-103196508) | |
| 170-324, gnl|tetNig1|chrUn_random (130117855-130118015) | |
| 170-324, gnl|xenTro1|scaffold_117 (662599-662440) | |
| 387-549, gnl|bosTau2|chr10 (55161411-55161249) | |
| 387-549, gnl|canFam2|chr8 (45752212-45752407) | |
| 387-549, gnl|danRer3|chr13 (38980913-38981086) | |
| 387-549, gnl|dasNov1|scaffold_89417 (4084-4257) | |
| 387-549, gnl|echTel1|scaffold_309442 (4124-4281) | |
| 387-549, gnl|fr1|chrUn (2850811-2850617) | |
| 387-549, gnl|galGal2|chr5 (25202253-25202075) | |
| 387-549, gnl|hg17|chr14 (68413523-68413717) | |
| 387-549, gnl|Hg17|chr14 (68413714-68413552) | |
| 387-549, gnl|loxAfr1|scaffold_9916 (3260-3441) | |
| 387-549, gnl|mm7|chr12 (78131861-78132027) | |
| 387-549, gnl|Mm7|chr12 (78132024-78131862) | |
| 387-549, gnl|monDom2|scaffold_8 (84915152-84915330) | |
| 387-549, gnl|oryCun1|scaffold_187628 (7126-6952) | |
| 387-549, gnl|panTro1|chr15 (68080206-68080400) | |
| 387-549, gnl|rheMac2|chr7 (131986934-131987129) | |
| 387-549, gnl|rn3|chr6 (103193484-103193665) | |
| 387-549, gnl|tetNig1|chrUn_random (21827261-21827092) | |
| 387-549, gnl|xenTro1|scaffold_117 (667427-667261) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-324, gnl|bosTau2|chr10 (55164312-55164158) | |
| 170-324, gnl|canFam2|chr8 (45755238-45755399) | |
| 170-324, gnl|danRer3|chr13 (38987848-38988008) | |
| 170-324, gnl|dasNov1|scaffold_45991 (1449-1610) | |
| 170-324, gnl|echTel1|scaffold_204200 (125-287) | |
| 170-324, gnl|fr1|chrUn (2849320-2849160) | |
| 170-324, gnl|galGal2|chr5 (25197983-25197824) | |
| 170-324, gnl|hg17|chr14 (68416428-68416589) | |
| 170-324, gnl|Hg17|chr14 (68416586-68416432) | |
| 170-324, gnl|loxAfr1|scaffold_9916 (6196-6357) | |
| 170-324, gnl|mm7|chr12 (78134729-78134890) | |
| 170-324, gnl|Mm7|chr12 (78134887-78134733) | |
| 170-324, gnl|monDom2|scaffold_8 (84921050-84921209) | |
| 170-324, gnl|oryCun1|scaffold_187628 (4466-4305) | |
| 170-324, gnl|panTro1|chr15 (68083112-68083273) | |
| 170-324, gnl|rheMac2|chr7 (131989895-131990056) | |
| 170-324, gnl|rn3|chr6 (103196347-103196508) | |
| 170-324, gnl|tetNig1|chrUn_random (130117855-130118015) | |
| 170-324, gnl|xenTro1|scaffold_117 (662599-662440) | |
| 387-549, gnl|bosTau2|chr10 (55161411-55161249) | |
| 387-549, gnl|canFam2|chr8 (45752212-45752407) | |
| 387-549, gnl|danRer3|chr13 (38980913-38981086) | |
| 387-549, gnl|dasNov1|scaffold_89417 (4084-4257) | |
| 387-549, gnl|echTel1|scaffold_309442 (4124-4281) | |
| 387-549, gnl|fr1|chrUn (2850811-2850617) | |
| 387-549, gnl|galGal2|chr5 (25202253-25202075) | |
| 387-549, gnl|hg17|chr14 (68413523-68413717) | |
| 387-549, gnl|Hg17|chr14 (68413714-68413552) | |
| 387-549, gnl|loxAfr1|scaffold_9916 (3260-3441) | |
| 387-549, gnl|mm7|chr12 (78131861-78132027) | |
| 387-549, gnl|Mm7|chr12 (78132024-78131862) | |
| 387-549, gnl|monDom2|scaffold_8 (84915152-84915330) | |
| 387-549, gnl|oryCun1|scaffold_187628 (7126-6952) | |
| 387-549, gnl|panTro1|chr15 (68080206-68080400) | |
| 387-549, gnl|rheMac2|chr7 (131986934-131987129) | |
| 387-549, gnl|rn3|chr6 (103193484-103193665) | |
| 387-549, gnl|tetNig1|chrUn_random (21827261-21827092) | |
| 387-549, gnl|xenTro1|scaffold_117 (667427-667261) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mas (1.05152) | |
| nms (0.427716) | |
| nep (0.183925) | |
| ton (0.1755) | |
| ste (0.135208) | |
| ret (0.128733) | |
| ldo (0.0970026) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (1.05152) | |
| nms (0.427716) | |
| nep (0.183925) | |
| ton (0.1755) | |
| ste (0.135208) | |
| ret (0.128733) | |
| ldo (0.0970026) |