Ss1.1-rmas927b_n5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCGGTGTCGTCGGCGGTCCCTGAGACATGGCCTCCTCGGTGTTCTGCTGCCTGCGGTG CTGCAGAGATGGCGGGACGGGCCACATCCCTCTGAAAGAGATGCCGGCCGTGCAGCTGGA CACGCAACACATGGGAACAGATGTTGTCATTGTAAAAAATGGAAGAAGAATATGTGGAAC AGGAGGTTGTTTAGCCAGTGCACCCCTACATCAAAACAAAAGCTACTTTGAATTCAAAAT CCAGTCCACAGGAATCTGGGGTATTGGCGTTGCAACTCAGAAAGTTAACTTGAATCAGAT CCCTCTTGGCCGAGATGTGCACAGTTTGGTGATGAGAAATGATGGAGCCCTGTACCACAA CAACGAGGAGAAAAATAGGCTGCCAGCAAACAGCCTTCCCCAGGAGGGCGATGTGGTGGG TATTACATATGACCATGTAGAATTAAATGTATATTTGAATGGGAAAAACATGCATTGTCC AGCATCAGGAATACGAGGGACAGTGTATCCAGTTGTTTATGTTGATGACAGTGCAATTTT GGATTGCCAGTTCAGTGAATTTTATCATACTCCTCCACCTGGTTTTGAAAAGATATTATT TGAACAGCAGATCTTCTGAATGTATTTGTTTTTGAAACTTGTATTTCTGCACTGTTAAAA GTGTTTACCATTTAATAAAGCTTTACCTGACCTATAGATGAAAATATATTCTTAAAAACA TGCTTGTTAATGTTATCTAAGTGTATACAATATACCATCCTGAAGTTCTGATTTAAAATA CTTACGTTTTGTGATATGAAATCAGCATTTGGGGAAGTTTATTTAATTCTTATTTAAATA AATATAACTGTGGGTTTAATTAACAGTATTAAGTGGAAATATGTATATAAATATTTAAAA GGGAATCTTTCTTATGTAAAATACTTGTTTTGATAGAGATGTAGAGTTGAATGGGGTATT TTTGTCGTTCTGAAGATTGGACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCGGTGTCGTCGGCGGTCCCTGAGACATGGCCTCCTCGGTGTTCTGCTGCCTGCGGTG CTGCAGAGATGGCGGGACGGGCCACATCCCTCTGAAAGAGATGCCGGCCGTGCAGCTGGA CACGCAACACATGGGAACAGATGTTGTCATTGTAAAAAATGGAAGAAGAATATGTGGAAC AGGAGGTTGTTTAGCCAGTGCACCCCTACATCAAAACAAAAGCTACTTTGAATTCAAAAT CCAGTCCACAGGAATCTGGGGTATTGGCGTTGCAACTCAGAAAGTTAACTTGAATCAGAT CCCTCTTGGCCGAGATGTGCACAGTTTGGTGATGAGAAATGATGGAGCCCTGTACCACAA CAACGAGGAGAAAAATAGGCTGCCAGCAAACAGCCTTCCCCAGGAGGGCGATGTGGTGGG TATTACATATGACCATGTAGAATTAAATGTATATTTGAATGGGAAAAACATGCATTGTCC AGCATCAGGAATACGAGGGACAGTGTATCCAGTTGTTTATGTTGATGACAGTGCAATTTT GGATTGCCAGTTCAGTGAATTTTATCATACTCCTCCACCTGGTTTTGAAAAGATATTATT TGAACAGCAGATCTTCTGAATGTATTTGTTTTTGAAACTTGTATTTCTGCACTGTTAAAA GTGTTTACCATTTAATAAAGCTTTACCTGACCTATAGATGAAAATATATTCTTAAAAACA TGCTTGTTAATGTTATCTAAGTGTATACAATATACCATCCTGAAGTTCTGATTTAAAATA CTTACGTTTTGTGATATGAAATCAGCATTTGGGGAAGTTTATTTAATTCTTATTTAAATA AATATAACTGTGGGTTTAATTAACAGTATTAAGTGGAAATATGTATATAAATATTTAAAA GGGAATCTTTCTTATGTAAAATACTTGTTTTGATAGAGATGTAGAGTTGAATGGGGTATT TTTGTCGTTCTGAAGATTGGACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 18-135, + strand, RNAz p=0.564303 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 18-135, + strand, RNAz p=0.564303 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC022519, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 3-135, gnl|bosTau2|chr12 (8255030-8254898) | |
| 3-135, gnl|Hg17|chr13 (49408398-49408266) | |
| 3-135, gnl|Mm7|chr14 (56423898-56423762) | |
| 249-419, gnl|bosTau2|chr12 (8246728-8246558) | |
| 249-419, gnl|canFam2|chr22 (4872917-4872730) | |
| 249-419, gnl|canFam2|chr22 (4872766-4872905) | |
| 249-419, gnl|danRer3|chr1 (48047298-48047180) | |
| 249-419, gnl|danRer3|chr9 (28401770-28401951) | |
| 249-419, gnl|dasNov1|scaffold_2177 (85674-85524) | |
| 249-419, gnl|dasNov1|scaffold_278225 (228-356) | |
| 249-419, gnl|fr1|chrUn (200795995-200795815) | |
| 249-419, gnl|fr1|chrUn (200795873-200795991) | |
| 249-419, gnl|galGal2|chr1 (161503963-161504149) | |
| 249-419, gnl|hg17|chr13 (49400043-49400231) | |
| 249-419, gnl|Hg17|chr13 (49400224-49400055) | |
| 249-419, gnl|hg17|chrX (76384434-76384574) | |
| 249-419, gnl|loxAfr1|scaffold_74802 (1145-957) | |
| 249-419, gnl|loxAfr1|scaffold_74802 (994-1133) | |
| 249-419, gnl|mm7|chr14 (56412911-56413099) | |
| 249-419, gnl|Mm7|chr14 (56413093-56412923) | |
| 249-419, gnl|mm7|chr7 (136799860-136799743) | |
| 249-419, gnl|monDom2|scaffold_15 (56986781-56986593) | |
| 249-419, gnl|monDom2|scaffold_32 (19676292-19676151) | |
| 249-419, gnl|oryCun1|scaffold_201422 (7231-7419) | |
| 249-419, gnl|oryCun1|scaffold_201422 (7382-7243) | |
| 249-419, gnl|panTro1|chr14_random (15551793-15551981) | |
| 249-419, gnl|panTro1|chrX_random (71889944-71889804) | |
| 249-419, gnl|rheMac2|chr17 (28742537-28742725) | |
| 249-419, gnl|rheMac2|chrX (76050119-76050257) | |
| 249-419, gnl|rn3|chr15 (40709608-40709796) | |
| 249-419, gnl|rn3|chr2 (130139958-130139840) | |
| 249-419, gnl|tetNig1|chr2 (8692430-8692245) | |
| 249-419, gnl|tetNig1|chr2 (8692303-8692421) | |
| 249-419, gnl|xenTro1|scaffold_643 (277762-277948) | |
| 521-984, gnl|bosTau2|chr12 (8237680-8237213) | |
| 521-984, gnl|Hg17|chr13 (49387298-49386827) | |
| 521-984, gnl|Mm7|chr14 (56402484-56402043) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-135, gnl|bosTau2|chr12 (8255030-8254898) | |
| 3-135, gnl|Hg17|chr13 (49408398-49408266) | |
| 3-135, gnl|Mm7|chr14 (56423898-56423762) | |
| 249-419, gnl|bosTau2|chr12 (8246728-8246558) | |
| 249-419, gnl|canFam2|chr22 (4872917-4872730) | |
| 249-419, gnl|canFam2|chr22 (4872766-4872905) | |
| 249-419, gnl|danRer3|chr1 (48047298-48047180) | |
| 249-419, gnl|danRer3|chr9 (28401770-28401951) | |
| 249-419, gnl|dasNov1|scaffold_2177 (85674-85524) | |
| 249-419, gnl|dasNov1|scaffold_278225 (228-356) | |
| 249-419, gnl|fr1|chrUn (200795995-200795815) | |
| 249-419, gnl|fr1|chrUn (200795873-200795991) | |
| 249-419, gnl|galGal2|chr1 (161503963-161504149) | |
| 249-419, gnl|hg17|chr13 (49400043-49400231) | |
| 249-419, gnl|Hg17|chr13 (49400224-49400055) | |
| 249-419, gnl|hg17|chrX (76384434-76384574) | |
| 249-419, gnl|loxAfr1|scaffold_74802 (1145-957) | |
| 249-419, gnl|loxAfr1|scaffold_74802 (994-1133) | |
| 249-419, gnl|mm7|chr14 (56412911-56413099) | |
| 249-419, gnl|Mm7|chr14 (56413093-56412923) | |
| 249-419, gnl|mm7|chr7 (136799860-136799743) | |
| 249-419, gnl|monDom2|scaffold_15 (56986781-56986593) | |
| 249-419, gnl|monDom2|scaffold_32 (19676292-19676151) | |
| 249-419, gnl|oryCun1|scaffold_201422 (7231-7419) | |
| 249-419, gnl|oryCun1|scaffold_201422 (7382-7243) | |
| 249-419, gnl|panTro1|chr14_random (15551793-15551981) | |
| 249-419, gnl|panTro1|chrX_random (71889944-71889804) | |
| 249-419, gnl|rheMac2|chr17 (28742537-28742725) | |
| 249-419, gnl|rheMac2|chrX (76050119-76050257) | |
| 249-419, gnl|rn3|chr15 (40709608-40709796) | |
| 249-419, gnl|rn3|chr2 (130139958-130139840) | |
| 249-419, gnl|tetNig1|chr2 (8692430-8692245) | |
| 249-419, gnl|tetNig1|chr2 (8692303-8692421) | |
| 249-419, gnl|xenTro1|scaffold_643 (277762-277948) | |
| 521-984, gnl|bosTau2|chr12 (8237680-8237213) | |
| 521-984, gnl|Hg17|chr13 (49387298-49386827) | |
| 521-984, gnl|Mm7|chr14 (56402484-56402043) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cte (1.17096) | |
| vin (0.332557) | |
| bfe (0.299715) | |
| pla (0.267344) | |
| ova (0.258264) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fty (0.17584) | |
| mga (0.160205) | |
| fco (0.157208) | |
| isp (0.150376) | |
| cst (0.140036) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eru (0.120048) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.17096) | |
| vin (0.332557) | |
| bfe (0.299715) | |
| pla (0.267344) | |
| ova (0.258264) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fty (0.17584) | |
| mga (0.160205) | |
| fco (0.157208) | |
| isp (0.150376) | |
| cst (0.140036) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eru (0.120048) |