Non-Coding RNA Search

Ss1.1-rmas932b_a15.5

Sequence:


               
               ACAAATGTGCACCTTCAATGAACCTAGAGTACAGTCACAGGTAATGATGTTAAGCACACA
CACAAGAAATTCATTTTCGTCCTTTAAAAACCTTTTAGGACCTGTACCTTCCACAAGAGC
CAGGAAAGGAGAAGCCGCAGTCAGACGGAGGCAGAGCCCCGCCTGCCCCAGAGCTCTGGG
GCAAAACACAGCTTCCTCCGGCCTCAGCACCGACGGTTCCTTTCTTCCAGGAGCTGGTTA
TCAAATATTTCTTTTTCCCGGTAGCTGAGGGAAGGTCCTCGGATGTACTTCTCCTCGGCT
GTCTTGTAGTCCACTGAGTCCACGGCAGAAATCGCGCAGATGATGGCCTGCAAGAGGGCA
GCGGCTCAGGCTCGGGCCAGGCCACGGGGGCTCACAGGGAGCTCAGAGCTGTTGCCCGCC
TCCTGGCACAGCCCCTGCAGGTACTTCACCACCAGGTCCAGCTGCTCATCATCCTCCAGG
TAAGTCTCCACGCAGGTCACATGTTGCCCCGAGCTCAGGAAGGTCTTCAGCCACCTGGAT
GGCCTCCTGTTGTTCAGGATGTCCCGAAGGTGGCCCTCAGCACCCCTGGCCTTCACGATG
TATTCCACCAGCCTCTGGTTGGCACGGTCCCGGGCGGCCCTCGAACGGTCAGGGAGGACC
TTCCTGCAGGCCTGCCTCCTGCCCTTCGGGCCCCCCACTGTGGGCTCCTCCAGGTCCCCC
CTGCTCAGCTGGGGGAACCTGGTCCCCTGGACGTCCTGCTGGATTGACTTGCGGACAGGG
TAGCTTATGTCAGCTGCATAATATTCCAGAAAAGAGCCGGTGAAAGAACCACAGCCGAGC
CGGACCCTGTAGTCGGTGATGAGCGAGACGCACCAGCCGATGGCCTGACCAAAGTCTTCC
TTGGCCTCGTCCAGAAACGCCTGCTTCTCCTTACAATCAAAATGCTTCAGCGTCTAAGAG
ACACCGTGATGCCTCTCCCTTTGGGGTTCATGTTTCCTTCAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAATGTGCACCTTCAATGAACCTAGAGTACAGTCACAGGTAATGATGTTAAGCACACA
CACAAGAAATTCATTTTCGTCCTTTAAAAACCTTTTAGGACCTGTACCTTCCACAAGAGC
CAGGAAAGGAGAAGCCGCAGTCAGACGGAGGCAGAGCCCCGCCTGCCCCAGAGCTCTGGG
GCAAAACACAGCTTCCTCCGGCCTCAGCACCGACGGTTCCTTTCTTCCAGGAGCTGGTTA
TCAAATATTTCTTTTTCCCGGTAGCTGAGGGAAGGTCCTCGGATGTACTTCTCCTCGGCT
GTCTTGTAGTCCACTGAGTCCACGGCAGAAATCGCGCAGATGATGGCCTGCAAGAGGGCA
GCGGCTCAGGCTCGGGCCAGGCCACGGGGGCTCACAGGGAGCTCAGAGCTGTTGCCCGCC
TCCTGGCACAGCCCCTGCAGGTACTTCACCACCAGGTCCAGCTGCTCATCATCCTCCAGG
TAAGTCTCCACGCAGGTCACATGTTGCCCCGAGCTCAGGAAGGTCTTCAGCCACCTGGAT
GGCCTCCTGTTGTTCAGGATGTCCCGAAGGTGGCCCTCAGCACCCCTGGCCTTCACGATG
TATTCCACCAGCCTCTGGTTGGCACGGTCCCGGGCGGCCCTCGAACGGTCAGGGAGGACC
TTCCTGCAGGCCTGCCTCCTGCCCTTCGGGCCCCCCACTGTGGGCTCCTCCAGGTCCCCC
CTGCTCAGCTGGGGGAACCTGGTCCCCTGGACGTCCTGCTGGATTGACTTGCGGACAGGG
TAGCTTATGTCAGCTGCATAATATTCCAGAAAAGAGCCGGTGAAAGAACCACAGCCGAGC
CGGACCCTGTAGTCGGTGATGAGCGAGACGCACCAGCCGATGGCCTGACCAAAGTCTTCC
TTGGCCTCGTCCAGAAACGCCTGCTTCTCCTTACAATCAAAATGCTTCAGCGTCTAAGAG
ACACCGTGATGCCTCTCCCTTTGGGGTTCATGTTTCCTTCAATAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61847092|ref|XP_591156.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61847092|ref|XP_591156.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               653-807, + strand, RNAz p=0.983887

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               653-807, + strand, RNAz p=0.983887

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-259, gnl|bosTau2|chr7 (29087076-29087356)
               

               
               1-259, gnl|Hg17|chr19 (1327908-1327517)
               


               
               414-807, gnl|bosTau2|chr7 (29090974-29091368)
               

               
               414-807, gnl|Hg17|chr19 (1322011-1321627)
               

               
               414-807, gnl|Mm7|chr10 (80023425-80023037)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-259, gnl|bosTau2|chr7 (29087076-29087356)
               

               
               1-259, gnl|Hg17|chr19 (1327908-1327517)
               


               
               414-807, gnl|bosTau2|chr7 (29090974-29091368)
               

               
               414-807, gnl|Hg17|chr19 (1322011-1321627)
               

               
               414-807, gnl|Mm7|chr10 (80023425-80023037)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               pla (0.133672)

	1-259, gnl\|bosTau2\|chr7 (29087076-29087356)
	1-259, gnl\|Hg17\|chr19 (1327908-1327517)

	414-807, gnl\|bosTau2\|chr7 (29090974-29091368)
	414-807, gnl\|Hg17\|chr19 (1322011-1321627)
	414-807, gnl\|Mm7\|chr10 (80023425-80023037)