Ss1.1-rmas932b_l11.5
|
TCCTCAGCTGCCGCTAAGGTGCTCGGTTCTTCCGAGGAAGCTAAGGCCGCGTTGGGGTGA
GGCCCTCACTTCATCCGGCGACTAGCACCGCGCCTGGCAGCCCCCACCTAGCATTGGTCC
GCACCATGGCTTCCGTCTCGGAGCTCGCCTGCATCTACTCTGCCCTCATTCTGCACGACG
ATGAGGTTACGGTCACGGAGGATAAGATCAATGCTCTCATTAAAGCAGCAGGTGTAAATG
TTGAGCCATTCTGGCCAGGCTTGTTTGCAAAGGCTCTGGCCAATGTCAACATCGGGAGCC
TCATCTGCAATGTGGGGGCTGGTGGACCTGCCCCAGCAGCTGGTGCTGCACCAGCAGGAG
GTCCTGCCCCAGCCACCACTGCTGCCCCAGCTGAGGAGAAGAAAGTAGAAGCAAAGAAAG
AAGAATCTGAGGAGTCTGATGATGATATGGGCTTTGGTCTTTTTGACTAAACTTCTATAA
CATTCGATAATAAAAAGCTGAGCTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCTCAGCTGCCGCTAAGGTGCTCGGTTCTTCCGAGGAAGCTAAGGCCGCGTTGGGGTGA
GGCCCTCACTTCATCCGGCGACTAGCACCGCGCCTGGCAGCCCCCACCTAGCATTGGTCC
GCACCATGGCTTCCGTCTCGGAGCTCGCCTGCATCTACTCTGCCCTCATTCTGCACGACG
ATGAGGTTACGGTCACGGAGGATAAGATCAATGCTCTCATTAAAGCAGCAGGTGTAAATG
TTGAGCCATTCTGGCCAGGCTTGTTTGCAAAGGCTCTGGCCAATGTCAACATCGGGAGCC
TCATCTGCAATGTGGGGGCTGGTGGACCTGCCCCAGCAGCTGGTGCTGCACCAGCAGGAG
GTCCTGCCCCAGCCACCACTGCTGCCCCAGCTGAGGAGAAGAAAGTAGAAGCAAAGAAAG
AAGAATCTGAGGAGTCTGATGATGATATGGGCTTTGGTCTTTTTGACTAAACTTCTATAA
CATTCGATAATAAAAAGCTGAGCTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-198, gnl|bosTau2|chr9 (22396734-22396537) |
|
1-198, gnl|canFam2|chr30 (36340231-36340346) |
|
1-198, gnl|danRer3|chr20 (20295172-20295273) |
|
1-198, gnl|dasNov1|scaffold_16508 (14523-14638) |
|
1-198, gnl|echTel1|scaffold_211698 (3269-3141) |
|
1-198, gnl|fr1|chrUn (280369613-280369709) |
|
1-198, gnl|hg17|chr15 (67532213-67532342) |
|
1-198, gnl|Hg17|chr15 (67532217-67532414) |
|
1-198, gnl|loxAfr1|scaffold_7512 (30360-30236) |
|
1-198, gnl|mm7|chr9 (61941109-61940998) |
|
1-198, gnl|Mm7|chr9 (61941103-61940924) |
|
1-198, gnl|monDom2|scaffold_12 (42068437-42068310) |
|
1-198, gnl|oryCun1|scaffold_205015 (91859-91987) |
|
1-198, gnl|panTro1|chr16 (68160187-68160316) |
|
1-198, gnl|rheMac2|chr7 (48101058-48101187) |
|
1-198, gnl|rn3|chr8 (66066609-66066498) |
|
1-198, gnl|tetNig1|chr21 (2648238-2648324) |
|
1-198, gnl|xenTro1|scaffold_161 (1280798-1280902) |
| |
|
351-541, gnl|bosTau2|chr13 (46155426-46155617) |
|
351-541, gnl|Hg17|chr2 (176891280-176891076) |
|
351-541, gnl|Mm7|chr7 (123382736-123382544) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-198, gnl|bosTau2|chr9 (22396734-22396537) |
|
1-198, gnl|canFam2|chr30 (36340231-36340346) |
|
1-198, gnl|danRer3|chr20 (20295172-20295273) |
|
1-198, gnl|dasNov1|scaffold_16508 (14523-14638) |
|
1-198, gnl|echTel1|scaffold_211698 (3269-3141) |
|
1-198, gnl|fr1|chrUn (280369613-280369709) |
|
1-198, gnl|hg17|chr15 (67532213-67532342) |
|
1-198, gnl|Hg17|chr15 (67532217-67532414) |
|
1-198, gnl|loxAfr1|scaffold_7512 (30360-30236) |
|
1-198, gnl|mm7|chr9 (61941109-61940998) |
|
1-198, gnl|Mm7|chr9 (61941103-61940924) |
|
1-198, gnl|monDom2|scaffold_12 (42068437-42068310) |
|
1-198, gnl|oryCun1|scaffold_205015 (91859-91987) |
|
1-198, gnl|panTro1|chr16 (68160187-68160316) |
|
1-198, gnl|rheMac2|chr7 (48101058-48101187) |
|
1-198, gnl|rn3|chr8 (66066609-66066498) |
|
1-198, gnl|tetNig1|chr21 (2648238-2648324) |
|
1-198, gnl|xenTro1|scaffold_161 (1280798-1280902) |
| |
|
351-541, gnl|bosTau2|chr13 (46155426-46155617) |
|
351-541, gnl|Hg17|chr2 (176891280-176891076) |
|
351-541, gnl|Mm7|chr7 (123382736-123382544) |
|
cje (10.0793) |
|
che (9.81461) |
|
nlu (9.77573) |
|
eje (8.7962) |
|
cst (7.84204) |
|
mcp (7.33788) |
|
csp (6.76983) |
|
ssp (6.36943) |
|
cag (6.19897) |
|
ese (6.19861) |
|
elu (6.1657) |
|
col (6.04524) |
|
nms (5.98802) |
|
fty (5.97855) |
|
duo (5.70244) |
|
lnt (5.69233) |
|
nco (5.49895) |
|
nca (5.47495) |
|
amn (5.43024) |
|
med (5.34759) |
|
nep (5.33382) |
|
cki (5.28751) |
|
ill (5.26778) |
|
mas (5.25762) |
|
eru (5.04202) |
|
cly (4.94631) |
|
cut (4.75786) |
|
fli (4.66626) |
|
pty (4.56686) |
|
jca (4.5584) |
|
hlv (4.4562) |
|
sto (4.31577) |
|
nmm (4.24967) |
|
ton (4.212) |
|
eep (4.16718) |
|
ecc (4.14126) |
|
fce (4.07387) |
|
nje (3.81616) |
|
eli (3.79535) |
|
nbm (3.67501) |
|
csk (3.65939) |
|
cga (3.07005) |
|
eye (3.06905) |
|
ece (2.75166) |
|
sme (2.74893) |
|
fhi (2.37409) |
|
aor (2.34329) |
|
jej (2.2752) |
|
ebs (2.24772) |
|
cov (2.2466) |
|
fcc (1.78006) |
|
fbs (1.75346) |
|
ute (1.7262) |
|
cmu (1.67754) |
|
hea (1.63599) |
|
hyp (1.5712) |
|
rec (1.38456) |
|
ova (1.29132) |
|
cli (1.06968) |
|
sag (0.730861) |
|
pgl (0.592417) |
|
cte (0.58548) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
mgp (0.461361) |
|
fat (0.442282) |
|
spl (0.429553) |
|
ldo (0.38801) |
|
thg (0.380373) |
|
spc (0.340097) |
|
vin (0.332557) |
|
cty (0.31224) |
|
bfe (0.299715) |
|
kid (0.259471) |
|
gul (0.177588) |
|
fco (0.157208) |
|
ctl (0.153069) |
|
liv (0.146284) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
bla (0.124347) |
|
clu (0.119646) |
|
cje (10.0793) |
|
che (9.81461) |
|
nlu (9.77573) |
|
eje (8.7962) |
|
cst (7.84204) |
|
mcp (7.33788) |
|
csp (6.76983) |
|
ssp (6.36943) |
|
cag (6.19897) |
|
ese (6.19861) |
|
elu (6.1657) |
|
col (6.04524) |
|
nms (5.98802) |
|
fty (5.97855) |
|
duo (5.70244) |
|
lnt (5.69233) |
|
nco (5.49895) |
|
nca (5.47495) |
|
amn (5.43024) |
|
med (5.34759) |
|
nep (5.33382) |
|
cki (5.28751) |
|
ill (5.26778) |
|
mas (5.25762) |
|
eru (5.04202) |
|
cly (4.94631) |
|
cut (4.75786) |
|
fli (4.66626) |
|
pty (4.56686) |
|
jca (4.5584) |
|
hlv (4.4562) |
|
sto (4.31577) |
|
nmm (4.24967) |
|
ton (4.212) |
|
eep (4.16718) |
|
ecc (4.14126) |
|
fce (4.07387) |
|
nje (3.81616) |
|
eli (3.79535) |
|
nbm (3.67501) |
|
csk (3.65939) |
|
cga (3.07005) |
|
eye (3.06905) |
|
ece (2.75166) |
|
sme (2.74893) |
|
fhi (2.37409) |
|
aor (2.34329) |
|
jej (2.2752) |
|
ebs (2.24772) |
|
cov (2.2466) |
|
fcc (1.78006) |
|
fbs (1.75346) |
|
ute (1.7262) |
|
cmu (1.67754) |
|
hea (1.63599) |
|
hyp (1.5712) |
|
rec (1.38456) |
|
ova (1.29132) |
|
cli (1.06968) |
|
sag (0.730861) |
|
pgl (0.592417) |
|
cte (0.58548) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
mgp (0.461361) |
|
fat (0.442282) |
|
spl (0.429553) |
|
ldo (0.38801) |
|
thg (0.380373) |
|
spc (0.340097) |
|
vin (0.332557) |
|
cty (0.31224) |
|
bfe (0.299715) |
|
kid (0.259471) |
|
gul (0.177588) |
|
fco (0.157208) |
|
ctl (0.153069) |
|
liv (0.146284) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
bla (0.124347) |
|
clu (0.119646) |
