Non-Coding RNA Search

Ss1.1-rmas934b_p16.5

Sequence:


               
               GTGGGTTCTGCCTCACCCTTCTCCACCTGCCTGAAGATGGTGGCATCCCCCGACAGCCAG
GCTCGCTGTGCTCAGGGCCAGCCTCCACTGCTGTCCTGCTATGACACCTTGGCACCTCAC
TTCCGAGTTGACTGGTGCAATGTGTCCTTGGTGGACAAGTCAGTGCCAGAGCCCGCAGAT
GAGGTGCCTACTCCGGGCGATGGGATCCTGGAACACGACCCATTTTTCTGCCCACCCACC
GAGGCCACAGCCCGAGACTTCTTGACGGATGCCTTGGTCACCCTCCTGGTGCCCCTGCTG
GTGGCCCTGCTGCTCACCCTGCTGCTGGCCTACGTCATGTGCTGCCGGCGGGAGGGACGG
CTGAAGAGAGACTTGGCTACCTCTGACATCCAGATGGTTCACCATTGCACCATCCGTGGG
AACACCGAGGAGCTGCGACAGATGGCAGCCAGCAGAGAGGTGCCCCGGCCGCTCTCCACC
CTACCCATGTTCAACGTGCGCACGGGTGAGCGGCTGCCCCCCCAGGTGGACAACGCCCAG
GTGCCCCTCATCCTGGACCAGCACTGAGGACCCGCGCAGAGCAGCTTAACCCATGGCCAC
ATCCTTTCTCCCGATTCTGGCTCCTGGACTGATGGGCCCCAGGCCTGGAATAAGCAGAGA
AATGAGGATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGTTCTGCCTCACCCTTCTCCACCTGCCTGAAGATGGTGGCATCCCCCGACAGCCAG
GCTCGCTGTGCTCAGGGCCAGCCTCCACTGCTGTCCTGCTATGACACCTTGGCACCTCAC
TTCCGAGTTGACTGGTGCAATGTGTCCTTGGTGGACAAGTCAGTGCCAGAGCCCGCAGAT
GAGGTGCCTACTCCGGGCGATGGGATCCTGGAACACGACCCATTTTTCTGCCCACCCACC
GAGGCCACAGCCCGAGACTTCTTGACGGATGCCTTGGTCACCCTCCTGGTGCCCCTGCTG
GTGGCCCTGCTGCTCACCCTGCTGCTGGCCTACGTCATGTGCTGCCGGCGGGAGGGACGG
CTGAAGAGAGACTTGGCTACCTCTGACATCCAGATGGTTCACCATTGCACCATCCGTGGG
AACACCGAGGAGCTGCGACAGATGGCAGCCAGCAGAGAGGTGCCCCGGCCGCTCTCCACC
CTACCCATGTTCAACGTGCGCACGGGTGAGCGGCTGCCCCCCCAGGTGGACAACGCCCAG
GTGCCCCTCATCCTGGACCAGCACTGAGGACCCGCGCAGAGCAGCTTAACCCATGGCCAC
ATCCTTTCTCCCGATTCTGGCTCCTGGACTGATGGGCCCCAGGCCTGGAATAAGCAGAGA
AATGAGGATGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5SWB0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5SWB0_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               150-360, gnl|bosTau2|chr19 (29202944-29202734)
               

               
               150-360, gnl|Hg17|chr17 (45602502-45602712)
               

               
               150-360, gnl|Mm7|chr11 (95078602-95078392)
               


               
               380-579, gnl|bosTau2|chr19 (29198309-29198110)
               

               
               380-579, gnl|Hg17|chr17 (45607610-45607809)
               

               
               380-579, gnl|Mm7|chr11 (95072445-95072245)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-360, gnl|bosTau2|chr19 (29202944-29202734)
               

               
               150-360, gnl|Hg17|chr17 (45602502-45602712)
               

               
               150-360, gnl|Mm7|chr11 (95078602-95078392)
               


               
               380-579, gnl|bosTau2|chr19 (29198309-29198110)
               

               
               380-579, gnl|Hg17|chr17 (45607610-45607809)
               

               
               380-579, gnl|Mm7|chr11 (95072445-95072245)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nep (0.36785)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	150-360, gnl\|bosTau2\|chr19 (29202944-29202734)
	150-360, gnl\|Hg17\|chr17 (45602502-45602712)
	150-360, gnl\|Mm7\|chr11 (95078602-95078392)

	380-579, gnl\|bosTau2\|chr19 (29198309-29198110)
	380-579, gnl\|Hg17\|chr17 (45607610-45607809)
	380-579, gnl\|Mm7\|chr11 (95072445-95072245)

	nep (0.36785)
	mas (0.210305)
	csp (0.161186)
	pty (0.142714)
	cly (0.120642)
	eru (0.120048)