Non-Coding RNA Search

Ss1.1-rmas934b_p9.5

Sequence:


               
               AAGGACAGGCAGCCACTGGATGCCAAGGACATTGAGCCCAGGGATGTGCTGCCCAACGGG
GATGGGACCTACCAGAGCTGGGTGGCTTTGGTGGTGCTCCCTGGGGAGGAGCAGAGATAC
AGCTGCCAGGTGGAGCACCCAGGCCTGGATCAGCCCCTCACTGCCCGCTGGGAGCCCTCG
CTGTCTGGCACCCTGGTCATTGGAATCATCAGTGGGATTGCTGTTTGTGTCATCATCTTT
ACTGGAATTTTGTTCAGAATCTTAAGGAGAAGGCAGGCTTTAAGAGCAGCCTCGGGGGAC
TATGTCTTAGCCGAATGTGAATGAAGAGCATGCTGCCTGCAGATCTGGTGGGGAGGAGAC
CTAACTCTTTGAGACTCAAAGAGAGGGAGCTCTTGTGGCCTTCTTCATGTCAAAAGACAG
CTGGACCTAAAAAATAAGAACTGTCTCAGGAACTCTCTGCTCTTAGCCTCTCCAGTTCCC
TCTCAAAGAGCTTCCCCATTTAGGTTCCTGAGTTCCTGCCTGCCGAGGGGCCCCAGCTGT
GACCTCTCCCCCAGAATCTGCTCTCCTGAATCCCAAGCTGCTTCTAGAGCCAGTCTTCAT
TTCCTGTGTCACCTCAGACTCCATATACCTACGTCATCTCATCTCCTAACCGTGGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGACAGGCAGCCACTGGATGCCAAGGACATTGAGCCCAGGGATGTGCTGCCCAACGGG
GATGGGACCTACCAGAGCTGGGTGGCTTTGGTGGTGCTCCCTGGGGAGGAGCAGAGATAC
AGCTGCCAGGTGGAGCACCCAGGCCTGGATCAGCCCCTCACTGCCCGCTGGGAGCCCTCG
CTGTCTGGCACCCTGGTCATTGGAATCATCAGTGGGATTGCTGTTTGTGTCATCATCTTT
ACTGGAATTTTGTTCAGAATCTTAAGGAGAAGGCAGGCTTTAAGAGCAGCCTCGGGGGAC
TATGTCTTAGCCGAATGTGAATGAAGAGCATGCTGCCTGCAGATCTGGTGGGGAGGAGAC
CTAACTCTTTGAGACTCAAAGAGAGGGAGCTCTTGTGGCCTTCTTCATGTCAAAAGACAG
CTGGACCTAAAAAATAAGAACTGTCTCAGGAACTCTCTGCTCTTAGCCTCTCCAGTTCCC
TCTCAAAGAGCTTCCCCATTTAGGTTCCTGAGTTCCTGCCTGCCGAGGGGCCCCAGCTGT
GACCTCTCCCCCAGAATCTGCTCTCCTGAATCCCAAGCTGCTTCTAGAGCCAGTCTTCAT
TTCCTGTGTCACCTCAGACTCCATATACCTACGTCATCTCATCTCCTAACCGTGGGAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UK37_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UK37_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-172, - strand, RNAz p=0.996072

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-172, - strand, RNAz p=0.996072

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-172, gnl|bosTau2|chr23 (24252896-24252725)
               

               
               1-172, gnl|Hg17|chr6 (26200996-26201167)
               

               
               1-172, gnl|Mm7|chr13 (23071834-23071663)
               


               
               284-660, gnl|bosTau2|chr23 (24251499-24251131)
               

               
               284-660, gnl|Hg17|chr6 (26202393-26202766)
               

               
               284-660, gnl|Mm7|chr13 (23070228-23069887)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr23 (24252896-24252725)
               

               
               1-172, gnl|Hg17|chr6 (26200996-26201167)
               

               
               1-172, gnl|Mm7|chr13 (23071834-23071663)
               


               
               284-660, gnl|bosTau2|chr23 (24251499-24251131)
               

               
               284-660, gnl|Hg17|chr6 (26202393-26202766)
               

               
               284-660, gnl|Mm7|chr13 (23070228-23069887)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mas (0.210305)
               

               
               duo (0.172801)
               

               
               cov (0.132153)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               duo (0.172801)
               

               
               cov (0.132153)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-172, gnl\|bosTau2\|chr23 (24252896-24252725)
	1-172, gnl\|Hg17\|chr6 (26200996-26201167)
	1-172, gnl\|Mm7\|chr13 (23071834-23071663)

	284-660, gnl\|bosTau2\|chr23 (24251499-24251131)
	284-660, gnl\|Hg17\|chr6 (26202393-26202766)
	284-660, gnl\|Mm7\|chr13 (23070228-23069887)

	mas (0.210305)
	duo (0.172801)
	cov (0.132153)
	cty (0.10408)
	ldo (0.0970026)