Non-Coding RNA Search

Ss1.1-rmas935b_b20.5

Sequence:


               
               CAGGCCCGGCTGGAGAAGCAGGTGCCGGTCCATAGCGTGTTCAGCCAGAGCGAGGTCATT
GATGTCATCGCCGTCACCAAGGGCAGGGGCGTCAAAGGGGTCACGAGCCGCTGGCACACC
AAGAAGCTGCCTCGGAAGACCCATAAGGGGCTGCGCAAGGTGGCCTGTATCGGCGCCTGG
CACCCTGCCCGTGTGGGCTGCTCCATTGCCCGGGCTGGGCAGAAAGGCTACCATCACCGA
ACGGAGCTCAACAAGAAGATCTACCGCATTGGGCGAGGGCTGCACATGTCGGATGGGAAG
ATGGTTAAGAATAACGCGTCCACCAGCTACGACATGACCGACAAGTCCATCACACCGCTG
GGTGGCTTCCCCCGCTACGGGGAAGTCAACAACGACTTCGTCATGCTGAAGGGTTGCATT
GCAGGCACCAAGAAGCGGGTCATCACACTGAGGAAGTCCCTCCTGGTGCACCACAGCCGC
CGGGCCCTGGAGAACGTTGAGCTGAAGTTCATCGACACCACCTCCAAGTTCGGCCACGGC
CGCTTCCAGACAGCCCAAGAGAAGAGGATCTTCATGGGTCCGCAGAAGAAGCATCTTGAG
AAGGAAACGCCGGAGACCTCAGGAGACTTGTAGGCAGGATGGGATGGAGGGAGCCTGAAA
AACGCGATGCAACCCCTTCCTGAGCCCCCTAATAAAAGCCAGAGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCCGGCTGGAGAAGCAGGTGCCGGTCCATAGCGTGTTCAGCCAGAGCGAGGTCATT
GATGTCATCGCCGTCACCAAGGGCAGGGGCGTCAAAGGGGTCACGAGCCGCTGGCACACC
AAGAAGCTGCCTCGGAAGACCCATAAGGGGCTGCGCAAGGTGGCCTGTATCGGCGCCTGG
CACCCTGCCCGTGTGGGCTGCTCCATTGCCCGGGCTGGGCAGAAAGGCTACCATCACCGA
ACGGAGCTCAACAAGAAGATCTACCGCATTGGGCGAGGGCTGCACATGTCGGATGGGAAG
ATGGTTAAGAATAACGCGTCCACCAGCTACGACATGACCGACAAGTCCATCACACCGCTG
GGTGGCTTCCCCCGCTACGGGGAAGTCAACAACGACTTCGTCATGCTGAAGGGTTGCATT
GCAGGCACCAAGAAGCGGGTCATCACACTGAGGAAGTCCCTCCTGGTGCACCACAGCCGC
CGGGCCCTGGAGAACGTTGAGCTGAAGTTCATCGACACCACCTCCAAGTTCGGCCACGGC
CGCTTCCAGACAGCCCAAGAGAAGAGGATCTTCATGGGTCCGCAGAAGAAGCATCTTGAG
AAGGAAACGCCGGAGACCTCAGGAGACTTGTAGGCAGGATGGGATGGAGGGAGCCTGAAA
AACGCGATGCAACCCCTTCCTGAGCCCCCTAATAAAAGCCAGAGGCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13384820|ref|NP_079701.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13384820|ref|NP_079701.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-590, gnl|bosTau2|chr10 (29601669-29601087)
               

               
               8-590, gnl|Hg17|chr6 (108432867-108432285)
               

               
               8-590, gnl|Mm7|chrX (11636320-11636902)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-590, gnl|bosTau2|chr10 (29601669-29601087)
               

               
               8-590, gnl|Hg17|chr6 (108432867-108432285)
               

               
               8-590, gnl|Mm7|chrX (11636320-11636902)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mas (0.42061)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               cki (0.165235)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               cki (0.165235)
               

               
               ldo (0.0970026)

	8-590, gnl\|bosTau2\|chr10 (29601669-29601087)
	8-590, gnl\|Hg17\|chr6 (108432867-108432285)
	8-590, gnl\|Mm7\|chrX (11636320-11636902)

	mas (0.42061)
	hlv (0.278513)
	nms (0.213858)
	hea (0.204499)
	cki (0.165235)
	ldo (0.0970026)