Non-Coding RNA Search

Ss1.1-rmas938b_k14.5

Sequence:


               
               GAGCGGAATGAGCTCAAAGCCAACGTGTTTCTGCTGAAGGAGGAGTTGGCCTACTTCCAT
CGGGAGCTGCTCACAGACCACCGGATCCCATGGCTTCTGCTTGAATCCATGAATGTGGCT
GTCAAGAAGCAACGGAAGAAGATCAAGGCCAAGATGTTAGGGACCCCATATGAAGCATAT
AGCAGTGACGATGATGATGGCTCCTGGCTCCTGCTCTCCATCGACAAGGGAGACCACCCA
CCACCTCCACCCCCTGAGTCCAGAATACGGAGTTTCTTTGGCCTGTGGTATCGGGGTGAA
GCAGAAGCCCCTGAAGCTGACGCCAGCAGTGCAGCTCCCAGAGAGCTGCGAGCAGGAGAG
GAGGCCACAGCACCACCCCATTTGGACCCTGTAGGCAGCCTGACAGCCCCCAGCTCCTGA
CCGGCCCTGCTCTGCTCTTGATGAGTATCTTCCACTGGGGCATCAGTTGCCCAAGAGACC
TGACTTTGGAGTCTGTCTGTGGGTGAATGTGTGCCCTCGCATGAGGCCAGGGTGCCCTCC
TTCCCCCCCAAGCTCGCTGCTGTCTTTTCTCTATCTCTTTTTTTGGGGGGGTGGGGGTTG
CACCCATGACACATGGAAGTTCCCGGGCCAGGGATCAAAGCTGCGCCACCGCAGAGACTG
GAGCCACTGCAGTGACTATGCCCAATCCTTAACCCTCTGAGTCACAAGGGAACTCCCCAA
AGCTCTTTTCTAATCCCGGCCTGAGCCAGGGCGTGCCGGGGAGTTCAGCCTACCTTCCTT
CTTATATCTCTGGGCCCAGCCTCGGGGCCACATGAAAGTGCTTCTTCTCCGAGAGTTTCC
CCCTCCATGAAATGGAGAGCTGACTTCCTCCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGAATGAGCTCAAAGCCAACGTGTTTCTGCTGAAGGAGGAGTTGGCCTACTTCCAT
CGGGAGCTGCTCACAGACCACCGGATCCCATGGCTTCTGCTTGAATCCATGAATGTGGCT
GTCAAGAAGCAACGGAAGAAGATCAAGGCCAAGATGTTAGGGACCCCATATGAAGCATAT
AGCAGTGACGATGATGATGGCTCCTGGCTCCTGCTCTCCATCGACAAGGGAGACCACCCA
CCACCTCCACCCCCTGAGTCCAGAATACGGAGTTTCTTTGGCCTGTGGTATCGGGGTGAA
GCAGAAGCCCCTGAAGCTGACGCCAGCAGTGCAGCTCCCAGAGAGCTGCGAGCAGGAGAG
GAGGCCACAGCACCACCCCATTTGGACCCTGTAGGCAGCCTGACAGCCCCCAGCTCCTGA
CCGGCCCTGCTCTGCTCTTGATGAGTATCTTCCACTGGGGCATCAGTTGCCCAAGAGACC
TGACTTTGGAGTCTGTCTGTGGGTGAATGTGTGCCCTCGCATGAGGCCAGGGTGCCCTCC
TTCCCCCCCAAGCTCGCTGCTGTCTTTTCTCTATCTCTTTTTTTGGGGGGGTGGGGGTTG
CACCCATGACACATGGAAGTTCCCGGGCCAGGGATCAAAGCTGCGCCACCGCAGAGACTG
GAGCCACTGCAGTGACTATGCCCAATCCTTAACCCTCTGAGTCACAAGGGAACTCCCCAA
AGCTCTTTTCTAATCCCGGCCTGAGCCAGGGCGTGCCGGGGAGTTCAGCCTACCTTCCTT
CTTATATCTCTGGGCCCAGCCTCGGGGCCACATGAAAGTGCTTCTTCTCCGAGAGTTTCC
CCCTCCATGAAATGGAGAGCTGACTTCCTCCCTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               67-185, - strand, RNAz p=0.68465
               

               
               276-434, - strand, RNAz p=0.817032

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               67-185, - strand, RNAz p=0.68465
               

               
               276-434, - strand, RNAz p=0.817032

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               336-439, - strand, RNAmicro p=0.940725

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               336-439, - strand, RNAmicro p=0.940725

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               56-185, gnl|bosTau2|chr19 (17288754-17288625)
               

               
               56-185, gnl|canFam2|chr9 (49119849-49120061)
               

               
               56-185, gnl|dasNov1|scaffold_84083 (4251-4044)
               

               
               56-185, gnl|echTel1|scaffold_318383 (43979-44195)
               

               
               56-185, gnl|galGal2|chr19 (5029305-5029520)
               

               
               56-185, gnl|hg17|chr17 (1497864-1498105)
               

               
               56-185, gnl|Hg17|chr17 (1498008-1497879)
               

               
               56-185, gnl|loxAfr1|scaffold_25338 (27783-27565)
               

               
               56-185, gnl|mm7|chr11 (75593493-75593289)
               

               
               56-185, gnl|Mm7|chr11 (75593349-75593476)
               

               
               56-185, gnl|monDom2|scaffold_86 (2820077-2820337)
               

               
               56-185, gnl|oryCun1|scaffold_191799 (4213-4420)
               

               
               56-185, gnl|panTro1|chr19_random (6390977-6390736)
               

               
               56-185, gnl|rheMac2|chr16 (1448600-1448825)
               

               
               56-185, gnl|rn3|chr10 (62847239-62847035)
               


               
               276-570, gnl|bosTau2|chr19 (17287644-17287354)
               

               
               276-570, gnl|Hg17|chr17 (1496663-1496401)
               

               
               276-570, gnl|Mm7|chr11 (75594273-75594552)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-185, gnl|bosTau2|chr19 (17288754-17288625)
               

               
               56-185, gnl|canFam2|chr9 (49119849-49120061)
               

               
               56-185, gnl|dasNov1|scaffold_84083 (4251-4044)
               

               
               56-185, gnl|echTel1|scaffold_318383 (43979-44195)
               

               
               56-185, gnl|galGal2|chr19 (5029305-5029520)
               

               
               56-185, gnl|hg17|chr17 (1497864-1498105)
               

               
               56-185, gnl|Hg17|chr17 (1498008-1497879)
               

               
               56-185, gnl|loxAfr1|scaffold_25338 (27783-27565)
               

               
               56-185, gnl|mm7|chr11 (75593493-75593289)
               

               
               56-185, gnl|Mm7|chr11 (75593349-75593476)
               

               
               56-185, gnl|monDom2|scaffold_86 (2820077-2820337)
               

               
               56-185, gnl|oryCun1|scaffold_191799 (4213-4420)
               

               
               56-185, gnl|panTro1|chr19_random (6390977-6390736)
               

               
               56-185, gnl|rheMac2|chr16 (1448600-1448825)
               

               
               56-185, gnl|rn3|chr10 (62847239-62847035)
               


               
               276-570, gnl|bosTau2|chr19 (17287644-17287354)
               

               
               276-570, gnl|Hg17|chr17 (1496663-1496401)
               

               
               276-570, gnl|Mm7|chr11 (75594273-75594552)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.42061)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               jej (0.0989218)

	67-185, - strand, RNAz p=0.68465
	276-434, - strand, RNAz p=0.817032

	56-185, gnl\|bosTau2\|chr19 (17288754-17288625)
	56-185, gnl\|canFam2\|chr9 (49119849-49120061)
	56-185, gnl\|dasNov1\|scaffold_84083 (4251-4044)
	56-185, gnl\|echTel1\|scaffold_318383 (43979-44195)
	56-185, gnl\|galGal2\|chr19 (5029305-5029520)
	56-185, gnl\|hg17\|chr17 (1497864-1498105)
	56-185, gnl\|Hg17\|chr17 (1498008-1497879)
	56-185, gnl\|loxAfr1\|scaffold_25338 (27783-27565)
	56-185, gnl\|mm7\|chr11 (75593493-75593289)
	56-185, gnl\|Mm7\|chr11 (75593349-75593476)
	56-185, gnl\|monDom2\|scaffold_86 (2820077-2820337)
	56-185, gnl\|oryCun1\|scaffold_191799 (4213-4420)
	56-185, gnl\|panTro1\|chr19_random (6390977-6390736)
	56-185, gnl\|rheMac2\|chr16 (1448600-1448825)
	56-185, gnl\|rn3\|chr10 (62847239-62847035)

	276-570, gnl\|bosTau2\|chr19 (17287644-17287354)
	276-570, gnl\|Hg17\|chr17 (1496663-1496401)
	276-570, gnl\|Mm7\|chr11 (75594273-75594552)