Non-Coding RNA Search

Ss1.1-rmas939b_j9.5

Sequence:


               
               AGGTACCTCAGGGTGAGCAAAGGCCACTGGACTAGGGGCCCAGCCCCCCTCCCCGAAGCT
CCCCATCTGCACCTTCGTTGAACTGTGGTAGCTAGGAGGATCTTGGGGTGAAGGGTGATT
GTCTCGGCCACCGAAGCCGGGGCGAGAACACTGGGCTGGGGTCAGGAGCAGGTGGGAAGA
AAGTACCCTGGTCCCAAACCCAGCTGTGTCCTCAGCAGGCTCTGCCTTCCTGCCCCAGCT
TTTCTCTGATGCTATAAATTTTCTGGTCCCCCTGGATTTGGGGACAGTGTTGCCTTCCAC
ATCTAGAGACTGTTGTAACCAACCTTTTCTAACACAATAAAGAGGTGTCCTGGGCCCCAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTACCTCAGGGTGAGCAAAGGCCACTGGACTAGGGGCCCAGCCCCCCTCCCCGAAGCT
CCCCATCTGCACCTTCGTTGAACTGTGGTAGCTAGGAGGATCTTGGGGTGAAGGGTGATT
GTCTCGGCCACCGAAGCCGGGGCGAGAACACTGGGCTGGGGTCAGGAGCAGGTGGGAAGA
AAGTACCCTGGTCCCAAACCCAGCTGTGTCCTCAGCAGGCTCTGCCTTCCTGCCCCAGCT
TTTCTCTGATGCTATAAATTTTCTGGTCCCCCTGGATTTGGGGACAGTGTTGCCTTCCAC
ATCTAGAGACTGTTGTAACCAACCTTTTCTAACACAATAAAGAGGTGTCCTGGGCCCCAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-180, - strand, RNAz p=0.616693
               

               
               155-291, - strand, RNAz p=0.946849

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-180, - strand, RNAz p=0.616693
               

               
               155-291, - strand, RNAz p=0.946849

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               23-105, - strand, RNAmicro p=0.999548

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               23-105, - strand, RNAmicro p=0.999548

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003793, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003793, -

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               2-359, gnl|bosTau2|chr29 (36974017-36974375)
               

               
               2-359, gnl|canFam2|chr18 (53812808-53812394)
               

               
               2-359, gnl|hg17|chr11 (66087434-66087824)
               

               
               2-359, gnl|Hg17|chr11 (66087868-66087511)
               

               
               2-359, gnl|mm7|chr19 (4755803-4755416)
               

               
               2-359, gnl|Mm7|chr19 (4755381-4755722)
               

               
               2-359, gnl|monDom2|scaffold_107 (2453956-2453575)
               

               
               2-359, gnl|panTro1|chr9 (67336094-67336484)
               

               
               2-359, gnl|rheMac2|chr14 (7894063-7893674)
               

               
               2-359, gnl|rn3|chr1 (207628551-207628166)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-359, gnl|bosTau2|chr29 (36974017-36974375)
               

               
               2-359, gnl|canFam2|chr18 (53812808-53812394)
               

               
               2-359, gnl|hg17|chr11 (66087434-66087824)
               

               
               2-359, gnl|Hg17|chr11 (66087868-66087511)
               

               
               2-359, gnl|mm7|chr19 (4755803-4755416)
               

               
               2-359, gnl|Mm7|chr19 (4755381-4755722)
               

               
               2-359, gnl|monDom2|scaffold_107 (2453956-2453575)
               

               
               2-359, gnl|panTro1|chr9 (67336094-67336484)
               

               
               2-359, gnl|rheMac2|chr14 (7894063-7893674)
               

               
               2-359, gnl|rn3|chr1 (207628551-207628166)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               eye (0.170503)
               

               
               ute (0.132784)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               ute (0.132784)
               

               
               med (0.116252)

	2-180, - strand, RNAz p=0.616693
	155-291, - strand, RNAz p=0.946849

	2-359, gnl\|bosTau2\|chr29 (36974017-36974375)
	2-359, gnl\|canFam2\|chr18 (53812808-53812394)
	2-359, gnl\|hg17\|chr11 (66087434-66087824)
	2-359, gnl\|Hg17\|chr11 (66087868-66087511)
	2-359, gnl\|mm7\|chr19 (4755803-4755416)
	2-359, gnl\|Mm7\|chr19 (4755381-4755722)
	2-359, gnl\|monDom2\|scaffold_107 (2453956-2453575)
	2-359, gnl\|panTro1\|chr9 (67336094-67336484)
	2-359, gnl\|rheMac2\|chr14 (7894063-7893674)
	2-359, gnl\|rn3\|chr1 (207628551-207628166)