Ss1.1-rmcp01c_m15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTGCTGGGAGAAGAGCGTTATACACCAGCAATAGATGTTGGGAGCTGTGGATGCATC CTTGGGGAACTGTTCACAAAGAAGCCTATTTTTCAAGCCAATCTGGAACTGGCTCAGCTA GAACTGATCAGTCGACTCTGTGGTAGCCCTTGTCCAGCTGTGTGGCCTGATGTTATCAAG CTGCCCTATTTCAATACAATGAAACCGAAGAAGCAGTATAGAAGGCGCCTACGAGAAGAA TTCTCTTTCATTCCTTCAGCAGCACTTGATTTACTGGACCACATGCTGACACTAGATCCT AGCAAACGTTGTACAGCTGAACAGACCCTACAGAGTGACTTCCTTAAAGATGTCGAGCTC AGCAAAATGGATCCTCCAGACCTACCCCACTGGCAGGATTGCCATGAATTATGGAGTAAG AAAAGGCGACGGCAGCGACAAAGTGGTGTATTGGTCGAAGAGCCACCTCCACCTAAAGCC TCTCGAAAAGAAACTATCTCAGGGACAAGTGCTGAGCCTGTGAAGAACAGCAGCCCAGCA CCACCTCAGCCTGCTCCTGGCAAGATGGAGCCTGGGGCTGGGGATGCAATAGGCCTTGGT GACATCACACAGCAGTTGAATCAAAGCGAATTGGCAGTGTTATTAAACCTGCTGCAGAGC CAAACCGACCTGAGCATTCCTCAAATGGCACAGCTGCTTAACATCCACTCCAACCCAGAG ATACAACAGCAGCTGGAGGCCCTGAACCAGTCTATCAGTGCCCTAACGGAAGCTGCTTCC CAGCAGCAGGACTCAGAGTCCATAGTCCCAGAGGAGTCTTTAAAGGAGGCACCCCCTGCC CCAGTGGTCCAGCCTTCAGCAGAACAGACAACCCCTGAAGCTTCAAGCACACCAGCTGAC ATGCAGAATATGTTGGCAGTTCTCTTGGGTCAACTGATGAAAACCCAGGAGCCAGCAGGC AACCTGGAGGAAAACAACAGTGACAACAAGAACAGTGGGCCACAGGGGCCCCGAAGAACT CCCACAATGCCACAGGAGGAGGCAGCAGAGAAGAGGCCCCCTGAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTGCTGGGAGAAGAGCGTTATACACCAGCAATAGATGTTGGGAGCTGTGGATGCATC CTTGGGGAACTGTTCACAAAGAAGCCTATTTTTCAAGCCAATCTGGAACTGGCTCAGCTA GAACTGATCAGTCGACTCTGTGGTAGCCCTTGTCCAGCTGTGTGGCCTGATGTTATCAAG CTGCCCTATTTCAATACAATGAAACCGAAGAAGCAGTATAGAAGGCGCCTACGAGAAGAA TTCTCTTTCATTCCTTCAGCAGCACTTGATTTACTGGACCACATGCTGACACTAGATCCT AGCAAACGTTGTACAGCTGAACAGACCCTACAGAGTGACTTCCTTAAAGATGTCGAGCTC AGCAAAATGGATCCTCCAGACCTACCCCACTGGCAGGATTGCCATGAATTATGGAGTAAG AAAAGGCGACGGCAGCGACAAAGTGGTGTATTGGTCGAAGAGCCACCTCCACCTAAAGCC TCTCGAAAAGAAACTATCTCAGGGACAAGTGCTGAGCCTGTGAAGAACAGCAGCCCAGCA CCACCTCAGCCTGCTCCTGGCAAGATGGAGCCTGGGGCTGGGGATGCAATAGGCCTTGGT GACATCACACAGCAGTTGAATCAAAGCGAATTGGCAGTGTTATTAAACCTGCTGCAGAGC CAAACCGACCTGAGCATTCCTCAAATGGCACAGCTGCTTAACATCCACTCCAACCCAGAG ATACAACAGCAGCTGGAGGCCCTGAACCAGTCTATCAGTGCCCTAACGGAAGCTGCTTCC CAGCAGCAGGACTCAGAGTCCATAGTCCCAGAGGAGTCTTTAAAGGAGGCACCCCCTGCC CCAGTGGTCCAGCCTTCAGCAGAACAGACAACCCCTGAAGCTTCAAGCACACCAGCTGAC ATGCAGAATATGTTGGCAGTTCTCTTGGGTCAACTGATGAAAACCCAGGAGCCAGCAGGC AACCTGGAGGAAAACAACAGTGACAACAAGAACAGTGGGCCACAGGGGCCCCGAAGAACT CCCACAATGCCACAGGAGGAGGCAGCAGAGAAGAGGCCCCCTGAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 630-789, - strand, RNAz p=0.940126 | |
| 870-1029, - strand, RNAz p=0.993547 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 630-789, - strand, RNAz p=0.940126 | |
| 870-1029, - strand, RNAz p=0.993547 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 128-248, gnl|bosTau2|chr19 (32991537-32991657) | |
| 128-248, gnl|canFam2|chr9 (26266586-26266436) | |
| 128-248, gnl|danRer3|chr19 (68828096-68828222) | |
| 128-248, gnl|dasNov1|scaffold_4795 (48664-48513) | |
| 128-248, gnl|echTel1|scaffold_306575 (4285-4137) | |
| 128-248, gnl|fr1|chrUn (17889333-17889186) | |
| 128-248, gnl|galGal2|chr27 (2665653-2665808) | |
| 128-248, gnl|hg17|chr17 (34927193-34927343) | |
| 128-248, gnl|Hg17|chr17 (34927215-34927335) | |
| 128-248, gnl|loxAfr1|scaffold_12094 (29712-29863) | |
| 128-248, gnl|mm7|chr11 (98349796-98349942) | |
| 128-248, gnl|Mm7|chr11 (98349814-98349934) | |
| 128-248, gnl|monDom2|scaffold_18 (48467113-48467258) | |
| 128-248, gnl|oryCun1|scaffold_202015 (111070-110919) | |
| 128-248, gnl|panTro1|chr19 (38162648-38162798) | |
| 128-248, gnl|rheMac2|chr16 (49610077-49610228) | |
| 128-248, gnl|rn3|chr10 (87030990-87031136) | |
| 128-248, gnl|tetNig1|chr3 (12905546-12905697) | |
| 128-248, gnl|xenTro1|scaffold_334 (86060-85927) | |
| 249-380, gnl|bosTau2|chr19 (32992032-32992163) | |
| 249-380, gnl|canFam2|chr9 (26265889-26265742) | |
| 249-380, gnl|danRer3|chr19 (68830892-68831047) | |
| 249-380, gnl|dasNov1|scaffold_4795 (48114-47955) | |
| 249-380, gnl|echTel1|scaffold_306575 (3519-3361) | |
| 249-380, gnl|fr1|chrUn (17889127-17888973) | |
| 249-380, gnl|galGal2|chr27 (2666410-2666555) | |
| 249-380, gnl|hg17|chr17 (34929713-34929872) | |
| 249-380, gnl|Hg17|chr17 (34929735-34929866) | |
| 249-380, gnl|loxAfr1|scaffold_12094 (30313-30472) | |
| 249-380, gnl|mm7|chr11 (98350715-98350874) | |
| 249-380, gnl|Mm7|chr11 (98350737-98350868) | |
| 249-380, gnl|monDom2|scaffold_18 (48467802-48467961) | |
| 249-380, gnl|oryCun1|scaffold_202015 (110473-110314) | |
| 249-380, gnl|panTro1|chr19 (38165179-38165338) | |
| 249-380, gnl|rheMac2|chr16 (49612939-49613098) | |
| 249-380, gnl|rn3|chr10 (87032134-87032293) | |
| 249-380, gnl|tetNig1|chr3 (12905754-12905907) | |
| 249-380, gnl|xenTro1|scaffold_334 (85555-85397) | |
| 591-1048, gnl|bosTau2|chr19 (32994675-32995129) | |
| 591-1048, gnl|Hg17|chr17 (34935641-34936095) | |
| 591-1048, gnl|Mm7|chr11 (98354254-98354708) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-248, gnl|bosTau2|chr19 (32991537-32991657) | |
| 128-248, gnl|canFam2|chr9 (26266586-26266436) | |
| 128-248, gnl|danRer3|chr19 (68828096-68828222) | |
| 128-248, gnl|dasNov1|scaffold_4795 (48664-48513) | |
| 128-248, gnl|echTel1|scaffold_306575 (4285-4137) | |
| 128-248, gnl|fr1|chrUn (17889333-17889186) | |
| 128-248, gnl|galGal2|chr27 (2665653-2665808) | |
| 128-248, gnl|hg17|chr17 (34927193-34927343) | |
| 128-248, gnl|Hg17|chr17 (34927215-34927335) | |
| 128-248, gnl|loxAfr1|scaffold_12094 (29712-29863) | |
| 128-248, gnl|mm7|chr11 (98349796-98349942) | |
| 128-248, gnl|Mm7|chr11 (98349814-98349934) | |
| 128-248, gnl|monDom2|scaffold_18 (48467113-48467258) | |
| 128-248, gnl|oryCun1|scaffold_202015 (111070-110919) | |
| 128-248, gnl|panTro1|chr19 (38162648-38162798) | |
| 128-248, gnl|rheMac2|chr16 (49610077-49610228) | |
| 128-248, gnl|rn3|chr10 (87030990-87031136) | |
| 128-248, gnl|tetNig1|chr3 (12905546-12905697) | |
| 128-248, gnl|xenTro1|scaffold_334 (86060-85927) | |
| 249-380, gnl|bosTau2|chr19 (32992032-32992163) | |
| 249-380, gnl|canFam2|chr9 (26265889-26265742) | |
| 249-380, gnl|danRer3|chr19 (68830892-68831047) | |
| 249-380, gnl|dasNov1|scaffold_4795 (48114-47955) | |
| 249-380, gnl|echTel1|scaffold_306575 (3519-3361) | |
| 249-380, gnl|fr1|chrUn (17889127-17888973) | |
| 249-380, gnl|galGal2|chr27 (2666410-2666555) | |
| 249-380, gnl|hg17|chr17 (34929713-34929872) | |
| 249-380, gnl|Hg17|chr17 (34929735-34929866) | |
| 249-380, gnl|loxAfr1|scaffold_12094 (30313-30472) | |
| 249-380, gnl|mm7|chr11 (98350715-98350874) | |
| 249-380, gnl|Mm7|chr11 (98350737-98350868) | |
| 249-380, gnl|monDom2|scaffold_18 (48467802-48467961) | |
| 249-380, gnl|oryCun1|scaffold_202015 (110473-110314) | |
| 249-380, gnl|panTro1|chr19 (38165179-38165338) | |
| 249-380, gnl|rheMac2|chr16 (49612939-49613098) | |
| 249-380, gnl|rn3|chr10 (87032134-87032293) | |
| 249-380, gnl|tetNig1|chr3 (12905754-12905907) | |
| 249-380, gnl|xenTro1|scaffold_334 (85555-85397) | |
| 591-1048, gnl|bosTau2|chr19 (32994675-32995129) | |
| 591-1048, gnl|Hg17|chr17 (34935641-34936095) | |
| 591-1048, gnl|Mm7|chr11 (98354254-98354708) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| pla (0.133672) |