Non-Coding RNA Search

Ss1.1-rmcp02c_l12.5

Sequence:


               
               GCAACCTCATGCTTTCTAGTGGGATTCGTTAACCACTGTGCCACAACGGGAACTCCCAAC
CATTACTTTAAATGGTTAGGTAGTTTATTAAAAATGTTCTCCAATAAGACAAAAGGAGAG
TGGGTTAAACAATAAAATTTTAACAGCTTTAAATCAAACACATCAAGTCGCTCGTGAGTA
GTAGGCTTTTTAAACTCTATATTTCCCATTTGCATAACCCAACTTGAACATTTCATTTGC
ACATGGTGACTATCTTACTTTAAAAAGTAAGATTTTACTTGCAAAATATATGTGGGTAAT
TAAGGATCCATAGGTTGACTAAAGAGATGAACACTGTAGAATATTATTTCCCAAAGTTAA
CACTGCTTTAGAAAGCACTTTCATCTCATTTGATCCTCTTAAGGAAACTCAGCCTCAGAG
AATGGGTAGAACTGATCCAGAATTGAGATCTTCTAGTGCCAAGCCATTGTTTCTTTCCAC
AGCATGAGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACCTCATGCTTTCTAGTGGGATTCGTTAACCACTGTGCCACAACGGGAACTCCCAAC
CATTACTTTAAATGGTTAGGTAGTTTATTAAAAATGTTCTCCAATAAGACAAAAGGAGAG
TGGGTTAAACAATAAAATTTTAACAGCTTTAAATCAAACACATCAAGTCGCTCGTGAGTA
GTAGGCTTTTTAAACTCTATATTTCCCATTTGCATAACCCAACTTGAACATTTCATTTGC
ACATGGTGACTATCTTACTTTAAAAAGTAAGATTTTACTTGCAAAATATATGTGGGTAAT
TAAGGATCCATAGGTTGACTAAAGAGATGAACACTGTAGAATATTATTTCCCAAAGTTAA
CACTGCTTTAGAAAGCACTTTCATCTCATTTGATCCTCTTAAGGAAACTCAGCCTCAGAG
AATGGGTAGAACTGATCCAGAATTGAGATCTTCTAGTGCCAAGCCATTGTTTCTTTCCAC
AGCATGAGACTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               67-491, gnl|bosTau2|chr2 (26169155-26168715)
               

               
               67-491, gnl|Hg17|chr2 (160782897-160782465)
               

               
               67-491, gnl|Mm7|chr2 (60530017-60529578)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-491, gnl|bosTau2|chr2 (26169155-26168715)
               

               
               67-491, gnl|Hg17|chr2 (160782897-160782465)
               

               
               67-491, gnl|Mm7|chr2 (60530017-60529578)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               mcp (0.170648)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	67-491, gnl\|bosTau2\|chr2 (26169155-26168715)
	67-491, gnl\|Hg17\|chr2 (160782897-160782465)
	67-491, gnl\|Mm7\|chr2 (60530017-60529578)

	hea (0.204499)
	mcp (0.170648)
	ssp (0.13552)
	bla (0.124347)
	tra (0.123092)