Non-Coding RNA Search

Ss1.1-rmcp03c_d24.5

Sequence:


               
               CAAGATTGAAAATTGGGTGAGCGAGGGTCCTAGTGAAGATGAGGCCGTGTGTGTGAACTG
CCAGAATAATAGCTATGGGGACAAATGCGAGAGCTGCCTTCACGGCTACTTCCTCCTCGA
AGGAAAGTGTACCAAATGCCAATGTAATGGCCATGCGGACACCTGCAACGAGCAGGATGG
GACAGGCTGCCCGTGTCAGAACAACACTGAGACGGGCACATGCCAGGGCAGCTCGCCCAG
TGACCGCCGGGACTGCTACAAATACCAGTGTGCTAAATGCCGGGAGTCATTCCACGGGAG
CCCTCTGGGTGGCCAGCAGTGCTACCGCCTCATCTCCGTGGAGCAGGAGTGCTGCCTGGA
CCCCACGTCCCAGACCAACTGTTTCCACGAGCCCAAGCGTCGGGCTCTGGGCCCTGGCCG
CACCGTCCTGTTTGGCGTACAGCCCAAGTTCACCAATGTGGACATCCGCCTGACACTGGA
CGTGACCTTTGGTGCCGTGGACCTCTATGTCTCCACCTCCTATGACACCTTCGTGGTCCG
TGTGGCCCCTGACACGGGTGTCCACACTGTGCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGATTGAAAATTGGGTGAGCGAGGGTCCTAGTGAAGATGAGGCCGTGTGTGTGAACTG
CCAGAATAATAGCTATGGGGACAAATGCGAGAGCTGCCTTCACGGCTACTTCCTCCTCGA
AGGAAAGTGTACCAAATGCCAATGTAATGGCCATGCGGACACCTGCAACGAGCAGGATGG
GACAGGCTGCCCGTGTCAGAACAACACTGAGACGGGCACATGCCAGGGCAGCTCGCCCAG
TGACCGCCGGGACTGCTACAAATACCAGTGTGCTAAATGCCGGGAGTCATTCCACGGGAG
CCCTCTGGGTGGCCAGCAGTGCTACCGCCTCATCTCCGTGGAGCAGGAGTGCTGCCTGGA
CCCCACGTCCCAGACCAACTGTTTCCACGAGCCCAAGCGTCGGGCTCTGGGCCCTGGCCG
CACCGTCCTGTTTGGCGTACAGCCCAAGTTCACCAATGTGGACATCCGCCTGACACTGGA
CGTGACCTTTGGTGCCGTGGACCTCTATGTCTCCACCTCCTATGACACCTTCGTGGTCCG
TGTGGCCCCTGACACGGGTGTCCACACTGTGCACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               305-424, - strand, RNAz p=0.518372

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-424, - strand, RNAz p=0.518372

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               266-576, gnl|bosTau2|chr18 (45063329-45063639)
               

               
               266-576, gnl|Hg17|chr19 (47571496-47571806)
               

               
               266-576, gnl|Mm7|chr7 (22152494-22152804)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               266-576, gnl|bosTau2|chr18 (45063329-45063639)
               

               
               266-576, gnl|Hg17|chr19 (47571496-47571806)
               

               
               266-576, gnl|Mm7|chr7 (22152494-22152804)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	266-576, gnl\|bosTau2\|chr18 (45063329-45063639)
	266-576, gnl\|Hg17\|chr19 (47571496-47571806)
	266-576, gnl\|Mm7\|chr7 (22152494-22152804)