Non-Coding RNA Search

Ss1.1-rmcp04c_g7.5

Sequence:


               
               CGGTGCTCGGCCGGGGCCGCAGGCCGGCGAGGAAGTCCTTCCGAGGTTGGAGACGCTCCT
GCAGCCAAGAAAAAGGTCGCGAAGCACCTGCGGCGACTCCGAGGGGGAGGAGGGGTCCCC
GGGAAAGCGCCTGGACACAGGTCTCACCAATGGCTTGGGGGGAGCGAGGAGCGAGCAGGA
GCTGGGCGCCCCGGGGAGGAAGGCCGCGCCCCGCCGCCGCTGCGCCTCCGAGTCCAGCAT
CTCCTCCAGCAGCAGCCCGCTCTGCGATGCCAGTTTCAGCGCGCCCAAGTGTGGCCGCGG
CAAGCCAGCCCTGGTCCGCAGGCACACGCTGGAGGACCGCAGCGAGCTGATCTCCTGCAT
CGAGAACGGCAACTACGCCAAGGCTGCCAGGATTGCGGCCGAGGTTGGTCAGAACAGCAT
GTGGATTTCAACCGATGCTGCAGCCTCTGTTCTCGAGCCCCTGAAAGTCGTGTGGGCCAA
GTGCAGCGGCTACCCCTCGTACCCGGCCCTGATCATTGACCCCAAGATGCCGCGCGTGCC
CGGCCACCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGCTCGGCCGGGGCCGCAGGCCGGCGAGGAAGTCCTTCCGAGGTTGGAGACGCTCCT
GCAGCCAAGAAAAAGGTCGCGAAGCACCTGCGGCGACTCCGAGGGGGAGGAGGGGTCCCC
GGGAAAGCGCCTGGACACAGGTCTCACCAATGGCTTGGGGGGAGCGAGGAGCGAGCAGGA
GCTGGGCGCCCCGGGGAGGAAGGCCGCGCCCCGCCGCCGCTGCGCCTCCGAGTCCAGCAT
CTCCTCCAGCAGCAGCCCGCTCTGCGATGCCAGTTTCAGCGCGCCCAAGTGTGGCCGCGG
CAAGCCAGCCCTGGTCCGCAGGCACACGCTGGAGGACCGCAGCGAGCTGATCTCCTGCAT
CGAGAACGGCAACTACGCCAAGGCTGCCAGGATTGCGGCCGAGGTTGGTCAGAACAGCAT
GTGGATTTCAACCGATGCTGCAGCCTCTGTTCTCGAGCCCCTGAAAGTCGTGTGGGCCAA
GTGCAGCGGCTACCCCTCGTACCCGGCCCTGATCATTGACCCCAAGATGCCGCGCGTGCC
CGGCCACCACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6X9Z4_HORSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6X9Z4_HORSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               138-344, gnl|bosTau2|chr5 (76387314-76387517)
               

               
               138-344, gnl|Hg17|chr22 (48492325-48491973)
               

               
               138-344, gnl|Mm7|chr15 (88775176-88775004)
               


               
               401-518, gnl|bosTau2|chr5 (76388140-76388257)
               

               
               401-518, gnl|Hg17|chr22 (48490669-48490552)
               

               
               401-518, gnl|Mm7|chr15 (88773261-88773145)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-344, gnl|bosTau2|chr5 (76387314-76387517)
               

               
               138-344, gnl|Hg17|chr22 (48492325-48491973)
               

               
               138-344, gnl|Mm7|chr15 (88775176-88775004)
               


               
               401-518, gnl|bosTau2|chr5 (76388140-76388257)
               

               
               401-518, gnl|Hg17|chr22 (48490669-48490552)
               

               
               401-518, gnl|Mm7|chr15 (88773261-88773145)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               ecc (0.115035)

	138-344, gnl\|bosTau2\|chr5 (76387314-76387517)
	138-344, gnl\|Hg17\|chr22 (48492325-48491973)
	138-344, gnl\|Mm7\|chr15 (88775176-88775004)

	401-518, gnl\|bosTau2\|chr5 (76388140-76388257)
	401-518, gnl\|Hg17\|chr22 (48490669-48490552)
	401-518, gnl\|Mm7\|chr15 (88773261-88773145)