Non-Coding RNA Search

Ss1.1-rmcp04c_k11.5

Sequence:


               
               TGATTACTGAGGATGTTCAGGGCCAAAACTGCTTGACCCACTTCCACGGCATGGATCTTA
CCCGTGACCAGATGTGCTCAATGGTCCAAAAATGGCAGACCATGATTGAAGCTCACGTTG
ATGTCAAGACTACCGATGGTTATTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAAC
GCCACCATCAGATTCGGAAGACCTCTTACGCTCAGCACCCACAAGTCCGCCCAATCCGGA
AGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAGGTGGTCC
ATAAATTGATTCCCAGACAGCATTGGAAAGGACATAGAAAAGGCTTGCCCGTCTATTTAT
CCGCTTCATGACGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCCAGTTTGAATTG
GGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTTCTGGAAAAGCTACTGGGGACGAG
ACCGGTGCTAAAGTTGAACGAGCTGATGGCTATGAGCCCCCCGTGCCAGAATCTGTTTAA
AATTCAGATTTTTAATGGTGACCAAATAAAAGATCTTATTTGTGATGTTTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTACTGAGGATGTTCAGGGCCAAAACTGCTTGACCCACTTCCACGGCATGGATCTTA
CCCGTGACCAGATGTGCTCAATGGTCCAAAAATGGCAGACCATGATTGAAGCTCACGTTG
ATGTCAAGACTACCGATGGTTATTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAAC
GCCACCATCAGATTCGGAAGACCTCTTACGCTCAGCACCCACAAGTCCGCCCAATCCGGA
AGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAGGTGGTCC
ATAAATTGATTCCCAGACAGCATTGGAAAGGACATAGAAAAGGCTTGCCCGTCTATTTAT
CCGCTTCATGACGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCCAGTTTGAATTG
GGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTTCTGGAAAAGCTACTGGGGACGAG
ACCGGTGCTAAAGTTGAACGAGCTGATGGCTATGAGCCCCCCGTGCCAGAATCTGTTTAA
AATTCAGATTTTTAATGGTGACCAAATAAAAGATCTTATTTGTGATGTTTTAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q862X0_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q862X0_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               282-481, + strand, RNAz p=0.820383

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-481, + strand, RNAz p=0.820383

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-600, gnl|bosTau2|chr13 (46751227-46750653)
               

               
               3-600, gnl|Hg17|chr7 (97660289-97659700)
               

               
               3-600, gnl|Mm7|chr14 (82842093-82841498)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-600, gnl|bosTau2|chr13 (46751227-46750653)
               

               
               3-600, gnl|Hg17|chr7 (97660289-97659700)
               

               
               3-600, gnl|Mm7|chr14 (82842093-82841498)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.511945)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.511945)
               

               
               bla (0.124347)

	3-600, gnl\|bosTau2\|chr13 (46751227-46750653)
	3-600, gnl\|Hg17\|chr7 (97660289-97659700)
	3-600, gnl\|Mm7\|chr14 (82842093-82841498)