Ss1.1-rmcp05c_k15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACGTGCAGACCCAGGAGACGCGCACGCTCACGCAGTTCCACTTCCTCAGCTGGCCGG CAGAGGGCACCCCGGCCTCCACCCGGCCCTTGCTGGACTTCCGCAGGAAGGTGAACAAGT GCTACCGGGGCCGCTCCTGCCCCATCATTGTGCACTGCAGTGACGGGGCGGGAAGGACTG GCACCTACATCCTCATCGACATGGTATTGAACCGCATGGCAAAAGGAGTGAAGGAGATTG ACATCGCGGCCACCCTGGAGCATGTCCGTGACCAGCGGCCTGGCCTCGTCCGCTCTAAGG ACCAGTTTGAGTTTGCCCTGACTGCGGTGGCGGAGGAGGTGAATGCCATCCTCAAGGCCC TGCCCCAGTGAGACCCCTGGGGCCCCTCGGTGGGCAGCCCAGAGTCTGCTCCCTCTCCGC CTGTGTGAGCCTCTTTCCATGTACTCGCTCCTCGCGTCCCCGCCCGCCGCCTTGGCCCCT CTTGGGCATGTCTGGCCCTTCCAAGAGGAGCATGGAAGGAAGGGGAAGCGGGAAGGGGCG GATCTGCCCTGCCTCTCACCTGCCAGAGCCCGGGTGTCCCATGGGGGAGCTGGCAGCCGG CCTGGAGGAGAAGAAAAGTCCTAAGCAGCAATTCCACCTAGAGCCTCCTCCTGCTTGAGT TCCCTGGCCCCCATCTCCCACCACTCTGGATGCTCCCAGTGTGTGGTGACGCCCCCCCCG CCCTCCAGTGTGGATAGAATGGGGTGAGGGCTGCCATGCCCAGCTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACGTGCAGACCCAGGAGACGCGCACGCTCACGCAGTTCCACTTCCTCAGCTGGCCGG CAGAGGGCACCCCGGCCTCCACCCGGCCCTTGCTGGACTTCCGCAGGAAGGTGAACAAGT GCTACCGGGGCCGCTCCTGCCCCATCATTGTGCACTGCAGTGACGGGGCGGGAAGGACTG GCACCTACATCCTCATCGACATGGTATTGAACCGCATGGCAAAAGGAGTGAAGGAGATTG ACATCGCGGCCACCCTGGAGCATGTCCGTGACCAGCGGCCTGGCCTCGTCCGCTCTAAGG ACCAGTTTGAGTTTGCCCTGACTGCGGTGGCGGAGGAGGTGAATGCCATCCTCAAGGCCC TGCCCCAGTGAGACCCCTGGGGCCCCTCGGTGGGCAGCCCAGAGTCTGCTCCCTCTCCGC CTGTGTGAGCCTCTTTCCATGTACTCGCTCCTCGCGTCCCCGCCCGCCGCCTTGGCCCCT CTTGGGCATGTCTGGCCCTTCCAAGAGGAGCATGGAAGGAAGGGGAAGCGGGAAGGGGCG GATCTGCCCTGCCTCTCACCTGCCAGAGCCCGGGTGTCCCATGGGGGAGCTGGCAGCCGG CCTGGAGGAGAAGAAAAGTCCTAAGCAGCAATTCCACCTAGAGCCTCCTCCTGCTTGAGT TCCCTGGCCCCCATCTCCCACCACTCTGGATGCTCCCAGTGTGTGGTGACGCCCCCCCCG CCCTCCAGTGTGGATAGAATGGGGTGAGGGCTGCCATGCCCAGCTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 572-678, - strand, RNAz p=0.97614 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 572-678, - strand, RNAz p=0.97614 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr2 (65233470-65233364) | |
| 1-107, gnl|canFam2|chr37 (28839743-28839810) | |
| 1-107, gnl|danRer3|chr6 (9402842-9402907) | |
| 1-107, gnl|dasNov1|scaffold_6587 (25360-25293) | |
| 1-107, gnl|echTel1|scaffold_293195 (9759-9826) | |
| 1-107, gnl|fr1|chrUn (159888906-159888973) | |
| 1-107, gnl|galGal2|chr2 (8249041-8249108) | |
| 1-107, gnl|hg17|chr2 (219985199-219985266) | |
| 1-107, gnl|Hg17|chr2 (219985307-219985201) | |
| 1-107, gnl|loxAfr1|scaffold_145 (130002-130069) | |
| 1-107, gnl|mm7|chr1 (75474780-75474847) | |
| 1-107, gnl|Mm7|chr1 (75474888-75474782) | |
| 1-107, gnl|monDom2|scaffold_39 (1255608-1255541) | |
| 1-107, gnl|oryCun1|scaffold_192283 (1438-1370) | |
| 1-107, gnl|panTro1|chr13 (110148970-110149037) | |
| 1-107, gnl|rheMac2|chr12 (83149534-83149601) | |
| 1-107, gnl|rn3|chr9 (74678710-74678777) | |
| 1-107, gnl|tetNig1|chr2 (13014584-13014517) | |
| 1-107, gnl|xenTro1|scaffold_31 (2955119-2955052) | |
| 298-766, gnl|bosTau2|chr2 (65228895-65228443) | |
| 298-766, gnl|Hg17|chr2 (219980526-219980051) | |
| 298-766, gnl|Mm7|chr1 (75470654-75470216) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr2 (65233470-65233364) | |
| 1-107, gnl|canFam2|chr37 (28839743-28839810) | |
| 1-107, gnl|danRer3|chr6 (9402842-9402907) | |
| 1-107, gnl|dasNov1|scaffold_6587 (25360-25293) | |
| 1-107, gnl|echTel1|scaffold_293195 (9759-9826) | |
| 1-107, gnl|fr1|chrUn (159888906-159888973) | |
| 1-107, gnl|galGal2|chr2 (8249041-8249108) | |
| 1-107, gnl|hg17|chr2 (219985199-219985266) | |
| 1-107, gnl|Hg17|chr2 (219985307-219985201) | |
| 1-107, gnl|loxAfr1|scaffold_145 (130002-130069) | |
| 1-107, gnl|mm7|chr1 (75474780-75474847) | |
| 1-107, gnl|Mm7|chr1 (75474888-75474782) | |
| 1-107, gnl|monDom2|scaffold_39 (1255608-1255541) | |
| 1-107, gnl|oryCun1|scaffold_192283 (1438-1370) | |
| 1-107, gnl|panTro1|chr13 (110148970-110149037) | |
| 1-107, gnl|rheMac2|chr12 (83149534-83149601) | |
| 1-107, gnl|rn3|chr9 (74678710-74678777) | |
| 1-107, gnl|tetNig1|chr2 (13014584-13014517) | |
| 1-107, gnl|xenTro1|scaffold_31 (2955119-2955052) | |
| 298-766, gnl|bosTau2|chr2 (65228895-65228443) | |
| 298-766, gnl|Hg17|chr2 (219980526-219980051) | |
| 298-766, gnl|Mm7|chr1 (75470654-75470216) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.341297) | |
| csp (0.161186) | |
| ecc (0.115035) |