Non-Coding RNA Search

Ss1.1-rmcp05c_k3.5

Sequence:


               
               ATGGATTTACCAGGACTGGATCTTCCTGGCCCGTGGAAAACCTATGCAATGATTGGATTT
GTAGCCTGGCATGTTGGGACAGAGATTGTTCTGGAGATACATGCTTACCGACTCTCCCGA
AAAGTTGAAATATTGGATGATGATAGGATTCAGATCCTCCAGTCGTGTACTGTAGCTGAA
GCAGAAGGTCATGCTTTTAAAAAGATGGTGTTAGCAATTTATGTCTGTGGGAATTTGACT
TTTCTCACTATGTTCTTATCTGCAATCAACCATCTATGAGCAAGTGAAGACCTTGGCTTT
TGCAGACCAGGTGATAATCATCATTGATCCAAAAAACTTGTTTCCTATGCCGACTCCCTG
GAGCGAATTCACGACTTCAAGTTGGGAAGACCAGGCCACGTCTATTGAGAAATTCTGAGG
TCTGGTCTTTAGAGATCAACATTCAGGAGGGTCCTATGGACCATAAATTGATGTCACATC
TTTATGTGTAATTCTGAGCCTTTATTAAAGGGGAGGCTTTGCTTGAGGAGAAATAACTCA
AATTTTTTTTTTTTATGCTGAATATTTGAGAATATTAGCATTTAAAAAAAGAACTGTTTG
GAAAAACAAAAAAGATGTCATTAGGATAAAATGGAGATTATATTAAGGCAAATATTTTGG
ACTATAAAGGTGCAATAGTACTTTAAAGAAAACATTTATTTTTACTACTTTATCTGAATG
GCCTTTCTTAGGAATTTTTTTCCCCCTTCTTTTCTTAGGAATGTTTGACAAACATGTTTT
TAAGTGCTATTTTTTTTTTTGGAAATGTCGTTTGTTCCATGTATTTTGCTACATTCCTGG
TAAAGGTGGAAGTGGGGCTAACACCATTTCATTAACATTTAATATATTATTAATATTGTA
ATTTCTTTCTTAGTAATGAAATGCAAGTATGTATCTTCTGATTAAGAGTGTCTTTATATA
TTCAGCTACAGAGCTGAAATGGCATTTTATATGTTAATTGTTTTGACTATAAGATTTAAG
TCCAAGCCTTTGGAGATTATAGACTTGCATTTCAAATTAATAAAATTCACTCTTACGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGATTTACCAGGACTGGATCTTCCTGGCCCGTGGAAAACCTATGCAATGATTGGATTT
GTAGCCTGGCATGTTGGGACAGAGATTGTTCTGGAGATACATGCTTACCGACTCTCCCGA
AAAGTTGAAATATTGGATGATGATAGGATTCAGATCCTCCAGTCGTGTACTGTAGCTGAA
GCAGAAGGTCATGCTTTTAAAAAGATGGTGTTAGCAATTTATGTCTGTGGGAATTTGACT
TTTCTCACTATGTTCTTATCTGCAATCAACCATCTATGAGCAAGTGAAGACCTTGGCTTT
TGCAGACCAGGTGATAATCATCATTGATCCAAAAAACTTGTTTCCTATGCCGACTCCCTG
GAGCGAATTCACGACTTCAAGTTGGGAAGACCAGGCCACGTCTATTGAGAAATTCTGAGG
TCTGGTCTTTAGAGATCAACATTCAGGAGGGTCCTATGGACCATAAATTGATGTCACATC
TTTATGTGTAATTCTGAGCCTTTATTAAAGGGGAGGCTTTGCTTGAGGAGAAATAACTCA
AATTTTTTTTTTTTATGCTGAATATTTGAGAATATTAGCATTTAAAAAAAGAACTGTTTG
GAAAAACAAAAAAGATGTCATTAGGATAAAATGGAGATTATATTAAGGCAAATATTTTGG
ACTATAAAGGTGCAATAGTACTTTAAAGAAAACATTTATTTTTACTACTTTATCTGAATG
GCCTTTCTTAGGAATTTTTTTCCCCCTTCTTTTCTTAGGAATGTTTGACAAACATGTTTT
TAAGTGCTATTTTTTTTTTTGGAAATGTCGTTTGTTCCATGTATTTTGCTACATTCCTGG
TAAAGGTGGAAGTGGGGCTAACACCATTTCATTAACATTTAATATATTATTAATATTGTA
ATTTCTTTCTTAGTAATGAAATGCAAGTATGTATCTTCTGATTAAGAGTGTCTTTATATA
TTCAGCTACAGAGCTGAAATGGCATTTTATATGTTAATTGTTTTGACTATAAGATTTAAG
TCCAAGCCTTTGGAGATTATAGACTTGCATTTCAAATTAATAAAATTCACTCTTACGAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-620, + strand, RNAz p=0.610964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-620, + strand, RNAz p=0.610964

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-124, gnl|bosTau2|chr3 (35347144-35347021)
               

               
               1-124, gnl|Hg17|chr1 (99888506-99888383)
               

               
               1-124, gnl|Mm7|chr3 (116675950-116676073)
               


               
               187-1068, gnl|bosTau2|chr3 (35345753-35344884)
               

               
               187-1068, gnl|Hg17|chr1 (99886697-99885505)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr3 (35347144-35347021)
               

               
               1-124, gnl|Hg17|chr1 (99888506-99888383)
               

               
               1-124, gnl|Mm7|chr3 (116675950-116676073)
               


               
               187-1068, gnl|bosTau2|chr3 (35345753-35344884)
               

               
               187-1068, gnl|Hg17|chr1 (99886697-99885505)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               kid (0.129735)

	1-124, gnl\|bosTau2\|chr3 (35347144-35347021)
	1-124, gnl\|Hg17\|chr1 (99888506-99888383)
	1-124, gnl\|Mm7\|chr3 (116675950-116676073)

	187-1068, gnl\|bosTau2\|chr3 (35345753-35344884)
	187-1068, gnl\|Hg17\|chr1 (99886697-99885505)