Ss1.1-rmcp07c_i18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGCGTCAGCTGATCTTGGAGTTGTGCTGCGTGCCGGCCGGTCCGGTCCGGGTCCTCT GGTCCCGCCGCCCCAGACGCAGCCATGTCGTTCTTCCCGGAGCTTTACTTCAACGTGGAC AATGGCTATTTGGAGGGGCTTGTGCGCGGCCTGAAGGCCGGAGTGCTCAGCCAGGCGGAC TACCTTAATCTGGTGCAGTGCGAGACGCTCGAGGACCTGAAGCTACACTTGCAGAGCACT GACTATGGCAACTTCCTGGCCAATGAGGCGTCACCACTGACAGTGTCCGTCATCGATGAT CGGCTTAAGGAGAAGATGGTGGTGGAGTTCCGCCACATGAGGAACCATGCCTATGAGCCA CTCGCCAGCTTCCTGGACTTCATTACTTACAGCTACATGATTGACAACGTAATCCTGCTC ATCACGGGCACTCTGCACCAGCGCTCTATCGCCGAGCTCGTGCCCAAGTGCCACCCACTA GGCAGCTTTGAGCAGATGGAGGCCGTGAACATCGCGCAGACACCCGCTGAGCTCTACAAT GCCATTCTGGTGGACACGCCCCTGGCGGCTTTTTTCCAGGACTGCATCTCAGAGCAGGAC CTGGATGAGATGAACATCGAGATCATCCGCAACACGCTCTACAAGGCCTACCTGGAGTCC TTCTACAAGTTCTGCACCCTACTGGGCGGGACCACGGCTGATGCCATGTGCCCCATCTTG GAGTTTGAAGCAGACCGCCGCGCCTTCATTATCACCATCAACTCCTTCGGCACAGAGCTG TCCAAGGAGGACCGTGCCAAGCTCTTTCCTCACTGTGGACGTCTCTACCCTGAGGGCCTG GCCCAGCTGGCCCGGGCCGACGACTACGAGCAGGTCAAGAATGTGGCTGACTACTACCCG GAGTACAAGCTGCTCTTTGAAGGTGCGGGCAGCAACCCCGGAGACAAGACTCTGGAGGAC CGATTCTTTGAGCACGAGGTGAAACTAAACAAGTTGGCCTTCCTGAACCAGTTCCACTTG GGTGTTTTCTACGCCTTTGTGAAGCTCAAGGAGCAGGAGTGTCGCAACATTGTGTGGATT GCCGAGTGCATTGCTCAGCGCCACCGCGCCAAGATTGACAACTACATCCCCATCTTCTAG CAGCCTGGCCCAAGGTTCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG CGCGCGCGCGCGCGCGTGCTGTGACCAAGCCCACAGCTCACCCACCTGCCACTAGCACAT TGTCCTAGTGGCTGTCCAGCTTCCCTCTCTCTGAAACCTCTCTTGGGCCTGAAAAGGGGC TAGGCATCTGCTTGCCCCACCAAGAATGGACCAAGTCCCTCCCTCTAGAGCAAGGAGGCC CTCTTTAGCCCTATGTTTATAGCTGCTGACGTATCTGAGAAGCATGTGGTCACTTTCGTG TCCCTCCCTCATGTACAAACCTCTGGGGGCAGTGTGAGCCTCCTCTCCCCTTGGTGGGTT CCCCCAGAGGCATGGCCCAGGGGCAGCCTACAGTGTGTGTCCTTGGGGAATGGGGGAAAT AGCTCTGCCCCTCTAAGACAATAAAAACTGCCCTGTCTGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGCGTCAGCTGATCTTGGAGTTGTGCTGCGTGCCGGCCGGTCCGGTCCGGGTCCTCT GGTCCCGCCGCCCCAGACGCAGCCATGTCGTTCTTCCCGGAGCTTTACTTCAACGTGGAC AATGGCTATTTGGAGGGGCTTGTGCGCGGCCTGAAGGCCGGAGTGCTCAGCCAGGCGGAC TACCTTAATCTGGTGCAGTGCGAGACGCTCGAGGACCTGAAGCTACACTTGCAGAGCACT GACTATGGCAACTTCCTGGCCAATGAGGCGTCACCACTGACAGTGTCCGTCATCGATGAT CGGCTTAAGGAGAAGATGGTGGTGGAGTTCCGCCACATGAGGAACCATGCCTATGAGCCA CTCGCCAGCTTCCTGGACTTCATTACTTACAGCTACATGATTGACAACGTAATCCTGCTC ATCACGGGCACTCTGCACCAGCGCTCTATCGCCGAGCTCGTGCCCAAGTGCCACCCACTA GGCAGCTTTGAGCAGATGGAGGCCGTGAACATCGCGCAGACACCCGCTGAGCTCTACAAT GCCATTCTGGTGGACACGCCCCTGGCGGCTTTTTTCCAGGACTGCATCTCAGAGCAGGAC CTGGATGAGATGAACATCGAGATCATCCGCAACACGCTCTACAAGGCCTACCTGGAGTCC TTCTACAAGTTCTGCACCCTACTGGGCGGGACCACGGCTGATGCCATGTGCCCCATCTTG GAGTTTGAAGCAGACCGCCGCGCCTTCATTATCACCATCAACTCCTTCGGCACAGAGCTG TCCAAGGAGGACCGTGCCAAGCTCTTTCCTCACTGTGGACGTCTCTACCCTGAGGGCCTG GCCCAGCTGGCCCGGGCCGACGACTACGAGCAGGTCAAGAATGTGGCTGACTACTACCCG GAGTACAAGCTGCTCTTTGAAGGTGCGGGCAGCAACCCCGGAGACAAGACTCTGGAGGAC CGATTCTTTGAGCACGAGGTGAAACTAAACAAGTTGGCCTTCCTGAACCAGTTCCACTTG GGTGTTTTCTACGCCTTTGTGAAGCTCAAGGAGCAGGAGTGTCGCAACATTGTGTGGATT GCCGAGTGCATTGCTCAGCGCCACCGCGCCAAGATTGACAACTACATCCCCATCTTCTAG CAGCCTGGCCCAAGGTTCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG CGCGCGCGCGCGCGCGTGCTGTGACCAAGCCCACAGCTCACCCACCTGCCACTAGCACAT TGTCCTAGTGGCTGTCCAGCTTCCCTCTCTCTGAAACCTCTCTTGGGCCTGAAAAGGGGC TAGGCATCTGCTTGCCCCACCAAGAATGGACCAAGTCCCTCCCTCTAGAGCAAGGAGGCC CTCTTTAGCCCTATGTTTATAGCTGCTGACGTATCTGAGAAGCATGTGGTCACTTTCGTG TCCCTCCCTCATGTACAAACCTCTGGGGGCAGTGTGAGCCTCCTCTCCCCTTGGTGGGTT CCCCCAGAGGCATGGCCCAGGGGCAGCCTACAGTGTGTGTCCTTGGGGAATGGGGGAAAT AGCTCTGCCCCTCTAAGACAATAAAAACTGCCCTGTCTGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 387-546, + strand, RNAz p=0.882806 | |
| 757-872, + strand, RNAz p=0.573766 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 387-546, + strand, RNAz p=0.882806 | |
| 757-872, + strand, RNAz p=0.573766 |
| Aligned organism(s): 78 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
| 1-214, gnl|bosTau2|chr18 (28653183-28652975) | |
| 1-214, gnl|canFam2|chr5 (84934647-84934509) | |
| 1-214, gnl|danRer3|chrUn (79530354-79530222) | |
| 1-214, gnl|dasNov1|scaffold_35349 (7470-7608) | |
| 1-214, gnl|echTel1|scaffold_172052 (16414-16276) | |
| 1-214, gnl|fr1|chrUn (101663942-101663804) | |
| 1-214, gnl|galGal2|chr11 (1328898-1329036) | |
| 1-214, gnl|hg17|chr16 (66072358-66072496) | |
| 1-214, gnl|Hg17|chr16 (66072570-66072361) | |
| 1-214, gnl|loxAfr1|scaffold_972 (37933-37815) | |
| 1-214, gnl|mm7|chr8 (104164419-104164557) | |
| 1-214, gnl|Mm7|chr8 (104164657-104164422) | |
| 1-214, gnl|monDom2|scaffold_23 (19254117-19253979) | |
| 1-214, gnl|oryCun1|scaffold_183866 (62688-62826) | |
| 1-214, gnl|panTro1|chr18 (60366548-60366686) | |
| 1-214, gnl|rheMac2|chr20 (65784872-65785010) | |
| 1-214, gnl|rn3|chr19 (35390697-35390835) | |
| 1-214, gnl|tetNig1|chrUn_random (6894739-6894601) | |
| 387-565, gnl|bosTau2|chr18 (28619078-28618900) | |
| 387-565, gnl|canFam2|chr5 (84967852-84967654) | |
| 387-565, gnl|danRer3|chrUn (79532256-79532062) | |
| 387-565, gnl|dasNov1|scaffold_127868 (4202-4004) | |
| 387-565, gnl|echTel1|scaffold_294247 (531-333) | |
| 387-565, gnl|fr1|chrUn (101665059-101664866) | |
| 387-565, gnl|galGal2|chr11 (1312525-1312725) | |
| 387-565, gnl|hg17|chr16 (66035920-66036118) | |
| 387-565, gnl|Hg17|chr16 (66036110-66035932) | |
| 387-565, gnl|loxAfr1|scaffold_83730 (830-1028) | |
| 387-565, gnl|mm7|chr8 (104129442-104129640) | |
| 387-565, gnl|Mm7|chr8 (104129632-104129454) | |
| 387-565, gnl|monDom2|scaffold_23 (19346522-19346324) | |
| 387-565, gnl|oryCun1|scaffold_188190 (36408-36606) | |
| 387-565, gnl|panTro1|chr18 (60297385-60297583) | |
| 387-565, gnl|rheMac2|chr20 (65746851-65747049) | |
| 387-565, gnl|rn3|chr19 (35353219-35353417) | |
| 387-565, gnl|tetNig1|chrUn_random (6895778-6895588) | |
| 387-565, gnl|xenTro1|scaffold_276 (655424-655609) | |
| 390-563, gnl|bosTau2|chr14 (48523404-48523231) | |
| 390-563, gnl|canFam2|chr29 (35368845-35369050) | |
| 390-563, gnl|danRer3|chrUn (79532071-79532255) | |
| 390-563, gnl|dasNov1|scaffold_59986 (8678-8880) | |
| 390-563, gnl|echTel1|scaffold_317001 (43370-43563) | |
| 390-563, gnl|fr1|chrUn (101664868-101665051) | |
| 390-563, gnl|galGal2|chr2 (122387113-122387318) | |
| 390-563, gnl|hg17|chr8 (87220787-87220992) | |
| 390-563, gnl|Hg17|chr8 (87220805-87220978) | |
| 390-563, gnl|loxAfr1|scaffold_972 (68737-68942) | |
| 390-563, gnl|mm7|chr4 (19818016-19817816) | |
| 390-563, gnl|Mm7|chr4 (19818001-19817828) | |
| 390-563, gnl|monDom2|scaffold_3 (82015382-82015191) | |
| 390-563, gnl|oryCun1|scaffold_213228 (48556-48351) | |
| 390-563, gnl|panTro1|chr7 (89350227-89350432) | |
| 390-563, gnl|rheMac2|chr8 (88707885-88708090) | |
| 390-563, gnl|rn3|chr5 (34489012-34488812) | |
| 390-563, gnl|tetNig1|chrUn_random (6895586-6895770) | |
| 390-563, gnl|xenTro1|scaffold_492 (604540-604333) | |
| 722-901, gnl|bosTau2|chr18 (28613963-28613784) | |
| 722-901, gnl|canFam2|chr5 (84972932-84972732) | |
| 722-901, gnl|danRer3|chrUn (79535223-79535000) | |
| 722-901, gnl|dasNov1|scaffold_138401 (7260-7453) | |
| 722-901, gnl|echTel1|scaffold_286938 (81311-81099) | |
| 722-901, gnl|fr1|chrUn (101665690-101665494) | |
| 722-901, gnl|galGal2|chr11 (1306631-1306821) | |
| 722-901, gnl|hg17|chr16 (66030368-66030568) | |
| 722-901, gnl|Hg17|chr16 (66030553-66030374) | |
| 722-901, gnl|loxAfr1|scaffold_121973 (5006-5191) | |
| 722-901, gnl|mm7|chr8 (104123955-104124155) | |
| 722-901, gnl|Mm7|chr8 (104124140-104123961) | |
| 722-901, gnl|monDom2|scaffold_23 (19361751-19361482) | |
| 722-901, gnl|oryCun1|scaffold_213228 (39498-39689) | |
| 722-901, gnl|panTro1|chr18 (60291884-60292084) | |
| 722-901, gnl|rheMac2|chr8 (88718538-88718347) | |
| 722-901, gnl|rn3|chr19 (35347830-35348030) | |
| 722-901, gnl|tetNig1|chrUn_random (6896392-6896193) | |
| 722-901, gnl|xenTro1|scaffold_276 (649424-649614) | |
| 1192-1594, gnl|bosTau2|chr18 (28613298-28612900) | |
| 1192-1594, gnl|Hg17|chr16 (66029886-66029431) | |
| 1192-1594, gnl|Mm7|chr8 (104123519-104123109) |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-214, gnl|bosTau2|chr18 (28653183-28652975) | |
| 1-214, gnl|canFam2|chr5 (84934647-84934509) | |
| 1-214, gnl|danRer3|chrUn (79530354-79530222) | |
| 1-214, gnl|dasNov1|scaffold_35349 (7470-7608) | |
| 1-214, gnl|echTel1|scaffold_172052 (16414-16276) | |
| 1-214, gnl|fr1|chrUn (101663942-101663804) | |
| 1-214, gnl|galGal2|chr11 (1328898-1329036) | |
| 1-214, gnl|hg17|chr16 (66072358-66072496) | |
| 1-214, gnl|Hg17|chr16 (66072570-66072361) | |
| 1-214, gnl|loxAfr1|scaffold_972 (37933-37815) | |
| 1-214, gnl|mm7|chr8 (104164419-104164557) | |
| 1-214, gnl|Mm7|chr8 (104164657-104164422) | |
| 1-214, gnl|monDom2|scaffold_23 (19254117-19253979) | |
| 1-214, gnl|oryCun1|scaffold_183866 (62688-62826) | |
| 1-214, gnl|panTro1|chr18 (60366548-60366686) | |
| 1-214, gnl|rheMac2|chr20 (65784872-65785010) | |
| 1-214, gnl|rn3|chr19 (35390697-35390835) | |
| 1-214, gnl|tetNig1|chrUn_random (6894739-6894601) | |
| 387-565, gnl|bosTau2|chr18 (28619078-28618900) | |
| 387-565, gnl|canFam2|chr5 (84967852-84967654) | |
| 387-565, gnl|danRer3|chrUn (79532256-79532062) | |
| 387-565, gnl|dasNov1|scaffold_127868 (4202-4004) | |
| 387-565, gnl|echTel1|scaffold_294247 (531-333) | |
| 387-565, gnl|fr1|chrUn (101665059-101664866) | |
| 387-565, gnl|galGal2|chr11 (1312525-1312725) | |
| 387-565, gnl|hg17|chr16 (66035920-66036118) | |
| 387-565, gnl|Hg17|chr16 (66036110-66035932) | |
| 387-565, gnl|loxAfr1|scaffold_83730 (830-1028) | |
| 387-565, gnl|mm7|chr8 (104129442-104129640) | |
| 387-565, gnl|Mm7|chr8 (104129632-104129454) | |
| 387-565, gnl|monDom2|scaffold_23 (19346522-19346324) | |
| 387-565, gnl|oryCun1|scaffold_188190 (36408-36606) | |
| 387-565, gnl|panTro1|chr18 (60297385-60297583) | |
| 387-565, gnl|rheMac2|chr20 (65746851-65747049) | |
| 387-565, gnl|rn3|chr19 (35353219-35353417) | |
| 387-565, gnl|tetNig1|chrUn_random (6895778-6895588) | |
| 387-565, gnl|xenTro1|scaffold_276 (655424-655609) | |
| 390-563, gnl|bosTau2|chr14 (48523404-48523231) | |
| 390-563, gnl|canFam2|chr29 (35368845-35369050) | |
| 390-563, gnl|danRer3|chrUn (79532071-79532255) | |
| 390-563, gnl|dasNov1|scaffold_59986 (8678-8880) | |
| 390-563, gnl|echTel1|scaffold_317001 (43370-43563) | |
| 390-563, gnl|fr1|chrUn (101664868-101665051) | |
| 390-563, gnl|galGal2|chr2 (122387113-122387318) | |
| 390-563, gnl|hg17|chr8 (87220787-87220992) | |
| 390-563, gnl|Hg17|chr8 (87220805-87220978) | |
| 390-563, gnl|loxAfr1|scaffold_972 (68737-68942) | |
| 390-563, gnl|mm7|chr4 (19818016-19817816) | |
| 390-563, gnl|Mm7|chr4 (19818001-19817828) | |
| 390-563, gnl|monDom2|scaffold_3 (82015382-82015191) | |
| 390-563, gnl|oryCun1|scaffold_213228 (48556-48351) | |
| 390-563, gnl|panTro1|chr7 (89350227-89350432) | |
| 390-563, gnl|rheMac2|chr8 (88707885-88708090) | |
| 390-563, gnl|rn3|chr5 (34489012-34488812) | |
| 390-563, gnl|tetNig1|chrUn_random (6895586-6895770) | |
| 390-563, gnl|xenTro1|scaffold_492 (604540-604333) | |
| 722-901, gnl|bosTau2|chr18 (28613963-28613784) | |
| 722-901, gnl|canFam2|chr5 (84972932-84972732) | |
| 722-901, gnl|danRer3|chrUn (79535223-79535000) | |
| 722-901, gnl|dasNov1|scaffold_138401 (7260-7453) | |
| 722-901, gnl|echTel1|scaffold_286938 (81311-81099) | |
| 722-901, gnl|fr1|chrUn (101665690-101665494) | |
| 722-901, gnl|galGal2|chr11 (1306631-1306821) | |
| 722-901, gnl|hg17|chr16 (66030368-66030568) | |
| 722-901, gnl|Hg17|chr16 (66030553-66030374) | |
| 722-901, gnl|loxAfr1|scaffold_121973 (5006-5191) | |
| 722-901, gnl|mm7|chr8 (104123955-104124155) | |
| 722-901, gnl|Mm7|chr8 (104124140-104123961) | |
| 722-901, gnl|monDom2|scaffold_23 (19361751-19361482) | |
| 722-901, gnl|oryCun1|scaffold_213228 (39498-39689) | |
| 722-901, gnl|panTro1|chr18 (60291884-60292084) | |
| 722-901, gnl|rheMac2|chr8 (88718538-88718347) | |
| 722-901, gnl|rn3|chr19 (35347830-35348030) | |
| 722-901, gnl|tetNig1|chrUn_random (6896392-6896193) | |
| 722-901, gnl|xenTro1|scaffold_276 (649424-649614) | |
| 1192-1594, gnl|bosTau2|chr18 (28613298-28612900) | |
| 1192-1594, gnl|Hg17|chr16 (66029886-66029431) | |
| 1192-1594, gnl|Mm7|chr8 (104123519-104123109) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| cbr (1.79166) | |
| fcc (0.791139) | |
| cov (0.660764) | |
| amn (0.417711) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| cty (0.20816) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.79166) | |
| fcc (0.791139) | |
| cov (0.660764) | |
| amn (0.417711) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| cty (0.20816) | |
| nep (0.183925) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| nbm (0.0993246) |