Non-Coding RNA Search

Ss1.1-rmcp08c_f16.5

Sequence:


               
               GCGGGTCAGTTGAGCGGAGAGGGCCAGTCAGCCGATTTAGGCCGCTCCTGGACACCTCGG
AGTTGCTGCCGCCATGGCTAGTCAGTCGCAGGGCATCCAGCAGCTGCTCCAGGCCGAGAA
GCGAGCCGCGGAGAAGGTGTCCGAGGCCCGCAAGCGAAAGAACCGAAGGCTGAAGCAGGC
CAAAGAAGAAGCCCAGGCTGAAATCGAACAGTACCGCCTGCAGAGGGAGAAGGAGTTCAA
GGCCAAGGAGGCTGCGGCTCTGGGATCCCACGGCAGCTGCAGCACTGAAGTGGAGAAGGA
CACCCAGGAGAAGATGACCATCCTCCAGACCTACTTCCGGCAGAACAGGGATGAGGTCCT
GGATAACCTTTTGGCCTTTGTCTGTGACATCCGGCCAGAAATCCACGAAAACTACCGCAT
AAACGGATAGGGGAAGAAGGGAAGAGCCTGTTCTGTGAATTGGCATTTTGGATGCCTTCA
TGGAATATGAGGCTTTTGCAAGGCTTGAGTTATGTTCTTATGAAAAGGCATTAAATTATT
TCTGTACATTATATCGTAGGTACTTTCACTTTTTGCACAATAGCAAATCTAGCTTCTTTG
TACACACTTAGAGCTCATCCAAAGATTTATCTTACTTCATACTTTTTAGAAATTTAATGT
GTATACGTTGTGTGTTTTCATATGCCTTTTCGCTCAAGCAGCATACACATCAATACTGAC
TTTTTCTTTCTTAGATATAGTTTTAAAGAAAAACAATTTTCTTAAGAAAGAAAGGGATTA
AAGATTTTTTTTTCCCCTAAATCTTTCTTGAAGGTCAGGGGCTTTTATCTATGAAAAAGT
AGTAAATAGTTATTTGTAACCTATGTGAAGCAGCAGCCAGCCTTAAAATAGTCTTTTCTG
GCTGAGGGTTAGAACAATGGGTACTAGTATAATTGTTTGGGCTGCTTTTAGTTTTTCTTA
ATCAAAATTACTAGATAATAGAATTCAAGAACTTGTTACATGTTACTACTTGATGTACCA
ATGCTGTACTGATAAAAGTACTTTTAAAAAAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGTCAGTTGAGCGGAGAGGGCCAGTCAGCCGATTTAGGCCGCTCCTGGACACCTCGG
AGTTGCTGCCGCCATGGCTAGTCAGTCGCAGGGCATCCAGCAGCTGCTCCAGGCCGAGAA
GCGAGCCGCGGAGAAGGTGTCCGAGGCCCGCAAGCGAAAGAACCGAAGGCTGAAGCAGGC
CAAAGAAGAAGCCCAGGCTGAAATCGAACAGTACCGCCTGCAGAGGGAGAAGGAGTTCAA
GGCCAAGGAGGCTGCGGCTCTGGGATCCCACGGCAGCTGCAGCACTGAAGTGGAGAAGGA
CACCCAGGAGAAGATGACCATCCTCCAGACCTACTTCCGGCAGAACAGGGATGAGGTCCT
GGATAACCTTTTGGCCTTTGTCTGTGACATCCGGCCAGAAATCCACGAAAACTACCGCAT
AAACGGATAGGGGAAGAAGGGAAGAGCCTGTTCTGTGAATTGGCATTTTGGATGCCTTCA
TGGAATATGAGGCTTTTGCAAGGCTTGAGTTATGTTCTTATGAAAAGGCATTAAATTATT
TCTGTACATTATATCGTAGGTACTTTCACTTTTTGCACAATAGCAAATCTAGCTTCTTTG
TACACACTTAGAGCTCATCCAAAGATTTATCTTACTTCATACTTTTTAGAAATTTAATGT
GTATACGTTGTGTGTTTTCATATGCCTTTTCGCTCAAGCAGCATACACATCAATACTGAC
TTTTTCTTTCTTAGATATAGTTTTAAAGAAAAACAATTTTCTTAAGAAAGAAAGGGATTA
AAGATTTTTTTTTCCCCTAAATCTTTCTTGAAGGTCAGGGGCTTTTATCTATGAAAAAGT
AGTAAATAGTTATTTGTAACCTATGTGAAGCAGCAGCCAGCCTTAAAATAGTCTTTTCTG
GCTGAGGGTTAGAACAATGGGTACTAGTATAATTGTTTGGGCTGCTTTTAGTTTTTCTTA
ATCAAAATTACTAGATAATAGAATTCAAGAACTTGTTACATGTTACTACTTGATGTACCA
ATGCTGTACTGATAAAAGTACTTTTAAAAAAGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               VATG1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               VATG1_BOVIN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               426-545, - strand, RNAz p=0.997426
               

               
               701-848, + strand, RNAz p=0.991295

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-545, - strand, RNAz p=0.997426
               

               
               701-848, + strand, RNAz p=0.991295

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004888, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004888, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               226-1018, gnl|bosTau2|chr25 (30344241-30343462)
               

               
               226-1018, gnl|Hg17|chr9 (114439400-114440172)
               

               
               226-1018, gnl|Mm7|chr2 (40135019-40134268)
               


               
               764-999, gnl|bosTau2|chr10 (33661670-33661439)
               

               
               764-999, gnl|Hg17|chr9 (114439923-114440154)
               

               
               764-999, gnl|Mm7|chr2 (100255323-100255546)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               226-1018, gnl|bosTau2|chr25 (30344241-30343462)
               

               
               226-1018, gnl|Hg17|chr9 (114439400-114440172)
               

               
               226-1018, gnl|Mm7|chr2 (40135019-40134268)
               


               
               764-999, gnl|bosTau2|chr10 (33661670-33661439)
               

               
               764-999, gnl|Hg17|chr9 (114439923-114440154)
               

               
               764-999, gnl|Mm7|chr2 (100255323-100255546)

Expressed library(ies): 68 entry(ies)

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Expressed library(ies): 68 entry(ies)

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               pro (1.5361)
               

               
               spl (1.43184)
               

               
               cki (1.15664)
               

               
               ste (1.08167)
               

               
               pgl (0.947867)
               

               
               kid (0.908147)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               che (0.545256)
               

               
               ton (0.526501)
               

               
               fbs (0.526039)
               

               
               mcp (0.511945)
               

               
               eje (0.494169)
               

               
               cly (0.482567)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               eru (0.360144)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               jca (0.34188)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 68 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.5361)
               

               
               spl (1.43184)
               

               
               cki (1.15664)
               

               
               ste (1.08167)
               

               
               pgl (0.947867)
               

               
               kid (0.908147)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               che (0.545256)
               

               
               ton (0.526501)
               

               
               fbs (0.526039)
               

               
               mcp (0.511945)
               

               
               eje (0.494169)
               

               
               cly (0.482567)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               eru (0.360144)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               jca (0.34188)
               

               
               cut (0.339847)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	426-545, - strand, RNAz p=0.997426
	701-848, + strand, RNAz p=0.991295

	226-1018, gnl\|bosTau2\|chr25 (30344241-30343462)
	226-1018, gnl\|Hg17\|chr9 (114439400-114440172)
	226-1018, gnl\|Mm7\|chr2 (40135019-40134268)

	764-999, gnl\|bosTau2\|chr10 (33661670-33661439)
	764-999, gnl\|Hg17\|chr9 (114439923-114440154)
	764-999, gnl\|Mm7\|chr2 (100255323-100255546)

	pro (1.5361)
	spl (1.43184)
	cki (1.15664)
	ste (1.08167)
	pgl (0.947867)
	kid (0.908147)
	tbr (0.616713)
	hea (0.613497)
	che (0.545256)
	ton (0.526501)
	fbs (0.526039)
	mcp (0.511945)
	eje (0.494169)
	cly (0.482567)
	mas (0.42061)
	cst (0.420109)
	fli (0.405762)
	pla (0.401016)
	lyg (0.399308)
	nmm (0.398406)
	fcc (0.39557)
	ldo (0.38801)
	eru (0.360144)
	fty (0.351679)
	ill (0.351185)
	sin (0.349895)
	jca (0.34188)
	cut (0.339847)
	nje (0.33184)
	sme (0.305437)
	cte (0.29274)
	liv (0.292569)
	lin (0.291206)
	fce (0.271592)
	ssp (0.271039)
	ese (0.253004)
	eep (0.245128)
	cbe (0.239234)
	ebs (0.236602)
	med (0.232504)
	ece (0.229305)
	tes (0.207814)
	nep (0.183925)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	clu (0.119646)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)
	jej (0.0989218)