Non-Coding RNA Search

Ss1.1-rmcp08c_n2.5

Sequence:


               
               CCGGAGCCGGAGTCGGAGCCGGGGCAGGAGTCACCGTCGCGGCTGGAGCGGAGTGAGCGG
CGTGTTGAGAGGCGAGCGGCGGCCGAGGTTTGTCTACGGATTTTGAGCATCTGAAGCTGC
CCTGCGAATCTAAGCACCGCCCGCTGCGCCCTCGCCCTTTGAAGCGATGTCTGTGGCTTA
CGATGATTCCGTTGGAGTAGAGGTGTCCAGTGACAGCTTCTGGGAGGTCGGGAACTACAA
GAGGACCGTCAAGCGGATCGATGACGGCCACCGCCTGTGCAGCGACCTCATGAACTGCCT
GCACGAGCGGGCGCGCATCGAGAAGGCGTACGCGCAGCAGCTCACCGAGTGGGCCCGGCG
CTGGAGGCAGCTTGTGGACAAGGGGCCTCAGTACGGGACGGTGGAGAAGGCCTGGGTGGC
CGTCATGTCCGAGGCGGAGAAGGTGAGCGAGCTGCACCTGGACGTGAAGGCCTCGCTGAT
GAACGAGGATTTCGAGAAGATCAAGAACTGGCAGAAGGAGGCCTTTCACAAGCAGATGAT
GGGAGGCTTTAAGGAGACCAAAGAAGCCGAAGATGGCTTTCGGAAGGCGCAGAAGCCCTG
GGCCAAGAAGCTGAAAGAGGTAGAAGCAGCCAAGAAAGCCTACCACGCAGCGTGCAAAGA
GGAGAAGCTGGCAATATCTCGAGAAACCAATAGCAAAGCGGATCCATCCCTNCACCCCGA
ACAGCTGAAGAAATTGCAAGAACAAGTAGAAAAATGCAAGCAAGACGTCCTTTAGACCAA
AGAGAAGTACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAGCCGGAGTCGGAGCCGGGGCAGGAGTCACCGTCGCGGCTGGAGCGGAGTGAGCGG
CGTGTTGAGAGGCGAGCGGCGGCCGAGGTTTGTCTACGGATTTTGAGCATCTGAAGCTGC
CCTGCGAATCTAAGCACCGCCCGCTGCGCCCTCGCCCTTTGAAGCGATGTCTGTGGCTTA
CGATGATTCCGTTGGAGTAGAGGTGTCCAGTGACAGCTTCTGGGAGGTCGGGAACTACAA
GAGGACCGTCAAGCGGATCGATGACGGCCACCGCCTGTGCAGCGACCTCATGAACTGCCT
GCACGAGCGGGCGCGCATCGAGAAGGCGTACGCGCAGCAGCTCACCGAGTGGGCCCGGCG
CTGGAGGCAGCTTGTGGACAAGGGGCCTCAGTACGGGACGGTGGAGAAGGCCTGGGTGGC
CGTCATGTCCGAGGCGGAGAAGGTGAGCGAGCTGCACCTGGACGTGAAGGCCTCGCTGAT
GAACGAGGATTTCGAGAAGATCAAGAACTGGCAGAAGGAGGCCTTTCACAAGCAGATGAT
GGGAGGCTTTAAGGAGACCAAAGAAGCCGAAGATGGCTTTCGGAAGGCGCAGAAGCCCTG
GGCCAAGAAGCTGAAAGAGGTAGAAGCAGCCAAGAAAGCCTACCACGCAGCGTGCAAAGA
GGAGAAGCTGGCAATATCTCGAGAAACCAATAGCAAAGCGGATCCATCCCTNCACCCCGA
ACAGCTGAAGAAATTGCAAGAACAAGTAGAAAAATGCAAGCAAGACGTCCTTTAGACCAA
AGAGAAGTACGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q504B6_BRARE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q504B6_BRARE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               383-621, + strand, RNAz p=0.922837

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-621, + strand, RNAz p=0.922837

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               383-621, gnl|bosTau2|chr23 (6731531-6731769)
               

               
               383-621, gnl|Hg17|chr6 (34604396-34604634)
               

               
               383-621, gnl|Mm7|chr17 (25890475-25890713)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               383-621, gnl|bosTau2|chr23 (6731531-6731769)
               

               
               383-621, gnl|Hg17|chr6 (34604396-34604634)
               

               
               383-621, gnl|Mm7|chr17 (25890475-25890713)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

	383-621, gnl\|bosTau2\|chr23 (6731531-6731769)
	383-621, gnl\|Hg17\|chr6 (34604396-34604634)
	383-621, gnl\|Mm7\|chr17 (25890475-25890713)