Non-Coding RNA Search

Ss1.1-rmcp10c_n22.5

Sequence:


               
               GCTCCACCTGGGCCCGCAGGCTGCCCCCAACCCCAGCAGCTGCCCGCTGTGCCTTGGCTT
CATCGCTCTCTGCCAGGAGGAATGGGTCGGCAGTGGCAGGTGGCACAAGGGGTTCCCGGA
GTCCAGCCGCCTCGGTGTCCAACTGTCCCGCTTTCTCTCGCAGCCGCTCAGCCTCCTGGC
GATGCCGCTGCAGCTCTTGGGAACAGGCCTCCAGCTCCAGCTCGCGTGTTCGGGCGGCCT
CCTGGAGGCCCCGCGCCCGGCCCTCACTGACCCGCAGCGCTGCCCGGGCCTCCCGCAGCG
CCACTCGCAGGGCTACCAGCTCGCTGCCCTTCTGCACCAGCTCTGCCTGAGACTCCTTCA
GTTGCTGCTTCAGCAGGGAGATCTCACCTGACTTCTGGCACACCTCCCACTTGGTCTCCT
CGAGCCGTGGTCCAAGCTCTCGCTGCTCCCGCTCGAAGGTAGCGCAGCGTCGCTCCAGCT
GCTCGCGTTCCTGCAGCAGCTGTGCAAAGTCATCCTGCAACTGCCGCTTCTCCTGCTGCA
GCTGGAATACCTGAAGCTGCAGGAGCTGCTGGGCCCGCTGTGCCCGCTGCGCCTGGGCCT
GGGTGGCACCATCCTCTCGCAGGGCCTCACGCTCGCGCTGCCAGTGCCGCTGCCGTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCACCTGGGCCCGCAGGCTGCCCCCAACCCCAGCAGCTGCCCGCTGTGCCTTGGCTT
CATCGCTCTCTGCCAGGAGGAATGGGTCGGCAGTGGCAGGTGGCACAAGGGGTTCCCGGA
GTCCAGCCGCCTCGGTGTCCAACTGTCCCGCTTTCTCTCGCAGCCGCTCAGCCTCCTGGC
GATGCCGCTGCAGCTCTTGGGAACAGGCCTCCAGCTCCAGCTCGCGTGTTCGGGCGGCCT
CCTGGAGGCCCCGCGCCCGGCCCTCACTGACCCGCAGCGCTGCCCGGGCCTCCCGCAGCG
CCACTCGCAGGGCTACCAGCTCGCTGCCCTTCTGCACCAGCTCTGCCTGAGACTCCTTCA
GTTGCTGCTTCAGCAGGGAGATCTCACCTGACTTCTGGCACACCTCCCACTTGGTCTCCT
CGAGCCGTGGTCCAAGCTCTCGCTGCTCCCGCTCGAAGGTAGCGCAGCGTCGCTCCAGCT
GCTCGCGTTCCTGCAGCAGCTGTGCAAAGTCATCCTGCAACTGCCGCTTCTCCTGCTGCA
GCTGGAATACCTGAAGCTGCAGGAGCTGCTGGGCCCGCTGTGCCCGCTGCGCCTGGGCCT
GGGTGGCACCATCCTCTCGCAGGGCCTCACGCTCGCGCTGCCAGTGCCGCTGCCGTTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BRY6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BRY6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               423-656, - strand, RNAz p=0.982753
               

               
               520-633, - strand, RNAz p=0.949902

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               423-656, - strand, RNAz p=0.982753
               

               
               520-633, - strand, RNAz p=0.949902

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               401-660, gnl|bosTau2|chr13 (34544003-34544268)
               

               
               401-660, gnl|canFam2|chr24 (21116489-21116310)
               

               
               401-660, gnl|danRer3|chrNA (160578963-160578792)
               

               
               401-660, gnl|dasNov1|scaffold_25409 (20517-20338)
               

               
               401-660, gnl|echTel1|scaffold_292610 (11717-11538)
               

               
               401-660, gnl|fr1|chrUn (109750957-109751118)
               

               
               401-660, gnl|galGal2|chr4 (88676334-88676513)
               

               
               401-660, gnl|hg17|chr20 (3094134-3094313)
               

               
               401-660, gnl|Hg17|chr20 (3094140-3094405)
               

               
               401-660, gnl|loxAfr1|scaffold_159328 (4237-4058)
               

               
               401-660, gnl|mm7|chr2 (130376617-130376796)
               

               
               401-660, gnl|Mm7|chr2 (130376623-130376888)
               

               
               401-660, gnl|monDom2|scaffold_10 (49081283-49081464)
               

               
               401-660, gnl|oryCun1|scaffold_200443 (214186-214007)
               

               
               401-660, gnl|panTro1|chr21 (3074853-3075032)
               

               
               401-660, gnl|rheMac2|chr10 (36473219-36473398)
               

               
               401-660, gnl|rn3|chr3 (118171597-118171776)
               

               
               401-660, gnl|tetNig1|chr12 (9163145-9163324)
               

               
               401-660, gnl|xenTro1|scaffold_366 (790671-790496)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               401-660, gnl|bosTau2|chr13 (34544003-34544268)
               

               
               401-660, gnl|canFam2|chr24 (21116489-21116310)
               

               
               401-660, gnl|danRer3|chrNA (160578963-160578792)
               

               
               401-660, gnl|dasNov1|scaffold_25409 (20517-20338)
               

               
               401-660, gnl|echTel1|scaffold_292610 (11717-11538)
               

               
               401-660, gnl|fr1|chrUn (109750957-109751118)
               

               
               401-660, gnl|galGal2|chr4 (88676334-88676513)
               

               
               401-660, gnl|hg17|chr20 (3094134-3094313)
               

               
               401-660, gnl|Hg17|chr20 (3094140-3094405)
               

               
               401-660, gnl|loxAfr1|scaffold_159328 (4237-4058)
               

               
               401-660, gnl|mm7|chr2 (130376617-130376796)
               

               
               401-660, gnl|Mm7|chr2 (130376623-130376888)
               

               
               401-660, gnl|monDom2|scaffold_10 (49081283-49081464)
               

               
               401-660, gnl|oryCun1|scaffold_200443 (214186-214007)
               

               
               401-660, gnl|panTro1|chr21 (3074853-3075032)
               

               
               401-660, gnl|rheMac2|chr10 (36473219-36473398)
               

               
               401-660, gnl|rn3|chr3 (118171597-118171776)
               

               
               401-660, gnl|tetNig1|chr12 (9163145-9163324)
               

               
               401-660, gnl|xenTro1|scaffold_366 (790671-790496)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	423-656, - strand, RNAz p=0.982753
	520-633, - strand, RNAz p=0.949902

	401-660, gnl\|bosTau2\|chr13 (34544003-34544268)
	401-660, gnl\|canFam2\|chr24 (21116489-21116310)
	401-660, gnl\|danRer3\|chrNA (160578963-160578792)
	401-660, gnl\|dasNov1\|scaffold_25409 (20517-20338)
	401-660, gnl\|echTel1\|scaffold_292610 (11717-11538)
	401-660, gnl\|fr1\|chrUn (109750957-109751118)
	401-660, gnl\|galGal2\|chr4 (88676334-88676513)
	401-660, gnl\|hg17\|chr20 (3094134-3094313)
	401-660, gnl\|Hg17\|chr20 (3094140-3094405)
	401-660, gnl\|loxAfr1\|scaffold_159328 (4237-4058)
	401-660, gnl\|mm7\|chr2 (130376617-130376796)
	401-660, gnl\|Mm7\|chr2 (130376623-130376888)
	401-660, gnl\|monDom2\|scaffold_10 (49081283-49081464)
	401-660, gnl\|oryCun1\|scaffold_200443 (214186-214007)
	401-660, gnl\|panTro1\|chr21 (3074853-3075032)
	401-660, gnl\|rheMac2\|chr10 (36473219-36473398)
	401-660, gnl\|rn3\|chr3 (118171597-118171776)
	401-660, gnl\|tetNig1\|chr12 (9163145-9163324)
	401-660, gnl\|xenTro1\|scaffold_366 (790671-790496)