Ss1.1-rmcp11c_a20.5
|
CCGCTCCCGAGGCGCTCGCGCTGCCCCCGCCGCGCTCCGAGGTAGTCGTAGCTCGGCCCG
TGTCGACAGGCCCGGGCCACCCCCAGGCCTCCGCCGCCCGCTGCCCGCCATGGACGACTA
CGCGGTCCTGTCGGACGCCGAGCTGGCTGCCGTGCTGCGCCAGTACAACATCCCGCACGG
GCCTGTCGTGGGTTCCACTCGCAAGCTCTACGAAAAGAAAATCTTCGAGTATGAGACCCA
GAGGCGGAGGCTCTCGCCCCCGAACTCCTCCGCATCCTCTTTCTCCTATCGGTTCTCGGA
CTTAGATTCTGCATCCGTGGACTCGGATATGTATGATCTGCCCAAGAAAGAGGACGCCTT
ACTTTACCAGAGCAAGGGCTATAATGACGACTACTATGAGGAGAGTTACTTGACCACCAG
GACTTACGGGGAGCCTGAGTCTGTGGGCACATCCAAGGGCTTCCGCCAGCCCTCGGCTTC
GCTCTCGGATGCTGACACCTTCCACCACCAGGTCCGTGACGACAGTCTCTTCTCTTCTGA
GGAGGACGGCAAGGATAGGGAACGCCCCGTGTACGGCCGGGACAGTGCCTACCAGAGCAT
CGCACACTATCGCCCCGTTTCCAAAAAAAGACCGTTCTCCCTGGGCCTGTCCTACTACCC
CACATCCTCCTCCGCCTCCTCCGCCTCCTCATCTTCATCTCCCCCTACTTCGTGGCTCAC
CCGCCGTGCCATCCGGCCGGAAAAGCAGGCCCCCGGGGCCGGTCTGGGCCGGGATCGCCA
GGTCCCGCTCTGGGGCCAGATGCTCCTGTTTCTGGTGTTTGCCGCCTTCCTGCTCTTTGT
CTACTACTCCATGCAGGCTGAGGATGGCAGCCCTTTCTGGGCGGAGCCCTGAGGTCCGCC
GCCTGCCTTAGCAGTGTTTGCGGGGGGTGGGGGGTGGGGGGCTTTTCTGTGTTCTAGCTT
TTGGGGGTACTGAGATGGGGGCAGCGTTTGCTTCCCCTGCCTTGTCCTGCCGGGGAGGCC
ACAGACCCAGGCCCTGTACAGCGTGCTGGGCCTGGGTGGGCCTTCCTCTGGAGCCTCCTG
GCCCCGCTTGCCTCTGACCCTTAGGGCCTAGGAGGGCGAAACCCTTCTCCTGGAGAGGAG
AACATGGTTGTCGTTGCATGCCTCCTGTTCATTGTCACCTTGTGGAGGGGGGTTATCAAA
GGCCACCCTGACTTTGTTTCCGTGGACACACAATAAAAAGACCGTTTATTTTTAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCTCCCGAGGCGCTCGCGCTGCCCCCGCCGCGCTCCGAGGTAGTCGTAGCTCGGCCCG
TGTCGACAGGCCCGGGCCACCCCCAGGCCTCCGCCGCCCGCTGCCCGCCATGGACGACTA
CGCGGTCCTGTCGGACGCCGAGCTGGCTGCCGTGCTGCGCCAGTACAACATCCCGCACGG
GCCTGTCGTGGGTTCCACTCGCAAGCTCTACGAAAAGAAAATCTTCGAGTATGAGACCCA
GAGGCGGAGGCTCTCGCCCCCGAACTCCTCCGCATCCTCTTTCTCCTATCGGTTCTCGGA
CTTAGATTCTGCATCCGTGGACTCGGATATGTATGATCTGCCCAAGAAAGAGGACGCCTT
ACTTTACCAGAGCAAGGGCTATAATGACGACTACTATGAGGAGAGTTACTTGACCACCAG
GACTTACGGGGAGCCTGAGTCTGTGGGCACATCCAAGGGCTTCCGCCAGCCCTCGGCTTC
GCTCTCGGATGCTGACACCTTCCACCACCAGGTCCGTGACGACAGTCTCTTCTCTTCTGA
GGAGGACGGCAAGGATAGGGAACGCCCCGTGTACGGCCGGGACAGTGCCTACCAGAGCAT
CGCACACTATCGCCCCGTTTCCAAAAAAAGACCGTTCTCCCTGGGCCTGTCCTACTACCC
CACATCCTCCTCCGCCTCCTCCGCCTCCTCATCTTCATCTCCCCCTACTTCGTGGCTCAC
CCGCCGTGCCATCCGGCCGGAAAAGCAGGCCCCCGGGGCCGGTCTGGGCCGGGATCGCCA
GGTCCCGCTCTGGGGCCAGATGCTCCTGTTTCTGGTGTTTGCCGCCTTCCTGCTCTTTGT
CTACTACTCCATGCAGGCTGAGGATGGCAGCCCTTTCTGGGCGGAGCCCTGAGGTCCGCC
GCCTGCCTTAGCAGTGTTTGCGGGGGGTGGGGGGTGGGGGGCTTTTCTGTGTTCTAGCTT
TTGGGGGTACTGAGATGGGGGCAGCGTTTGCTTCCCCTGCCTTGTCCTGCCGGGGAGGCC
ACAGACCCAGGCCCTGTACAGCGTGCTGGGCCTGGGTGGGCCTTCCTCTGGAGCCTCCTG
GCCCCGCTTGCCTCTGACCCTTAGGGCCTAGGAGGGCGAAACCCTTCTCCTGGAGAGGAG
AACATGGTTGTCGTTGCATGCCTCCTGTTCATTGTCACCTTGTGGAGGGGGGTTATCAAA
GGCCACCCTGACTTTGTTTCCGTGGACACACAATAAAAAGACCGTTTATTTTTAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-193, gnl|bosTau2|chrX (14371295-14371487) |
|
1-193, gnl|Hg17|chrX (153128581-153128775) |
|
1-193, gnl|Mm7|chrX (69641478-69641684) |
| |
|
377-513, gnl|bosTau2|chrX (14372112-14372248) |
|
377-513, gnl|echTel1|scaffold_224276 (8010-7677) |
|
377-513, gnl|hg17|chrX (153129336-153129706) |
|
377-513, gnl|Hg17|chrX (153129440-153129576) |
|
377-513, gnl|loxAfr1|scaffold_44349 (907-1346) |
|
377-513, gnl|mm7|chrX (69642293-69642633) |
|
377-513, gnl|Mm7|chrX (69642391-69642527) |
|
377-513, gnl|oryCun1|scaffold_201170 (70306-69955) |
|
377-513, gnl|panTro1|chrX (158411343-158410977) |
|
377-513, gnl|rheMac2|chrX (152373628-152373204) |
|
377-513, gnl|rn3|chrX (160429653-160429307) |
| |
|
557-909, gnl|bosTau2|chrX (14372848-14373205) |
|
557-909, gnl|Hg17|chrX (153130087-153130428) |
|
557-909, gnl|Mm7|chrX (69643654-69643999) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-193, gnl|bosTau2|chrX (14371295-14371487) |
|
1-193, gnl|Hg17|chrX (153128581-153128775) |
|
1-193, gnl|Mm7|chrX (69641478-69641684) |
| |
|
377-513, gnl|bosTau2|chrX (14372112-14372248) |
|
377-513, gnl|echTel1|scaffold_224276 (8010-7677) |
|
377-513, gnl|hg17|chrX (153129336-153129706) |
|
377-513, gnl|Hg17|chrX (153129440-153129576) |
|
377-513, gnl|loxAfr1|scaffold_44349 (907-1346) |
|
377-513, gnl|mm7|chrX (69642293-69642633) |
|
377-513, gnl|Mm7|chrX (69642391-69642527) |
|
377-513, gnl|oryCun1|scaffold_201170 (70306-69955) |
|
377-513, gnl|panTro1|chrX (158411343-158410977) |
|
377-513, gnl|rheMac2|chrX (152373628-152373204) |
|
377-513, gnl|rn3|chrX (160429653-160429307) |
| |
|
557-909, gnl|bosTau2|chrX (14372848-14373205) |
|
557-909, gnl|Hg17|chrX (153130087-153130428) |
|
557-909, gnl|Mm7|chrX (69643654-69643999) |
|
nmm (0.531209) |
|
fce (0.271592) |
|
med (0.232504) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
csp (0.161186) |
|
pty (0.142714) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
nmm (0.531209) |
|
fce (0.271592) |
|
med (0.232504) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
csp (0.161186) |
|
pty (0.142714) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
