Non-Coding RNA Search

Ss1.1-rmcp13c_a17.5

Sequence:


               
               GGTGGGTAGTCCTGGGGGTGGGGGGCAGGCCGTCCGCTCAGATGTTGGTCGCCGTCCTGG
CTGCTAACACTCAAAATCTGGCCACTTGGGAAGAAAACGGATATTTTTTTCCCCTCTCTG
CATTACTTGTATGGTTTTTGTTCTCTTTATTCCTTTATTTTTGAACCCATGATCTCCCCG
CGTGTCCAAGTGACTGTGCTGCAAGCGGCCTGGTGTGGCTCGGTCGAGGTGCCGAGGTGT
GGGCGGGGTGCAGAACAGGTGCGGGGAGCCCCCCGCCGCTCCACCCGGCTTGGCCTCTGT
TCTGGTGCCTGCCTGCGTGTCCCGGTCTTGTCTGTGAAGTGGGCGTGACGATCGCTGCCA
CCTTCCAACCTACCTCACAGGGGTGTTGTGGGGACACCGTGATCTCGGGTTGTTCATGTT
GTGATGCGCCGGGAGCCACCTGCCGCCGCCTTCCTCAAGACAGAGGGCACCCTCCTCCCC
TCCCACCCTGAGCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TGGCCCCTGCTTCTCCTTCCTCTGTCTATCTCCTCCATCAAGGAGCCATTCTGACTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGTAGTCCTGGGGGTGGGGGGCAGGCCGTCCGCTCAGATGTTGGTCGCCGTCCTGG
CTGCTAACACTCAAAATCTGGCCACTTGGGAAGAAAACGGATATTTTTTTCCCCTCTCTG
CATTACTTGTATGGTTTTTGTTCTCTTTATTCCTTTATTTTTGAACCCATGATCTCCCCG
CGTGTCCAAGTGACTGTGCTGCAAGCGGCCTGGTGTGGCTCGGTCGAGGTGCCGAGGTGT
GGGCGGGGTGCAGAACAGGTGCGGGGAGCCCCCCGCCGCTCCACCCGGCTTGGCCTCTGT
TCTGGTGCCTGCCTGCGTGTCCCGGTCTTGTCTGTGAAGTGGGCGTGACGATCGCTGCCA
CCTTCCAACCTACCTCACAGGGGTGTTGTGGGGACACCGTGATCTCGGGTTGTTCATGTT
GTGATGCGCCGGGAGCCACCTGCCGCCGCCTTCCTCAAGACAGAGGGCACCCTCCTCCCC
TCCCACCCTGAGCGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TGGCCCCTGCTTCTCCTTCCTCTGTCTATCTCCTCCATCAAGGAGCCATTCTGACTTCAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr7 (13954860-13955491)
               

               
               1-600, gnl|Hg17|chr19 (6365856-6365316)
               

               
               1-600, gnl|Mm7|chr17 (55233661-55233128)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr7 (13954860-13955491)
               

               
               1-600, gnl|Hg17|chr19 (6365856-6365316)
               

               
               1-600, gnl|Mm7|chr17 (55233661-55233128)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nmm (0.398406)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.398406)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-600, gnl\|bosTau2\|chr7 (13954860-13955491)
	1-600, gnl\|Hg17\|chr19 (6365856-6365316)
	1-600, gnl\|Mm7\|chr17 (55233661-55233128)

	nmm (0.398406)
	ece (0.229305)
	col (0.195008)
	mcp (0.170648)
	csp (0.161186)
	eru (0.120048)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)