Non-Coding RNA Search

Ss1.1-rmcp13c_a2.5

Sequence:


               
               TCGCGGCTCGCTTCCTGGCAGCGGTTCCTTCGCGTGGTGCAACAACCGGGGTCGCAGCGA
GGCGAGGGTTGAGCGCGTGGCCCGCGCCACAGGAGCCCGGCATGGAGTATCAGGAGGCTG
TGCGCACACTCAACACCCTGCAGACCAATGCCAACTACCTGGAGCAGGTGAAGCGCCAGC
GGGGTGACCCCCAGACACAGCTGGAAGCCATGAAGCTGTACTTGGCACGGAGTGGGCTGC
AGGTGGAGGACCTGGACCAACTGAACATTATTCACATCACCGGGACCAAGGGGAAGGGCT
CCACCTGTGCCTTTGCTGAACGCATCCTCCGAAGCTACGGCCTGAAGACAGGATTCTTTA
GCTCTCCCCACCTGGTGCAGGTGCGTGAGCGGATCCGCATCAACGGACAGCCCATAAGCC
CTGAGCTCTTCACCAAGTACTTCTGGCGCCTCTACCACCGGCTGGACGAGACCAAGGATG
ACAGCAGCTGTGTCTCCATGCCCAGCTACTTCCGTTTCCTCACGCTCATGGCTTTCCACG
TCTTCCTTCAAGAGAAGGTAGACCTGGCAGTGATGGAAGTGGGCATCGGCGGGGCTTACG
ACTGCACCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGGCTCGCTTCCTGGCAGCGGTTCCTTCGCGTGGTGCAACAACCGGGGTCGCAGCGA
GGCGAGGGTTGAGCGCGTGGCCCGCGCCACAGGAGCCCGGCATGGAGTATCAGGAGGCTG
TGCGCACACTCAACACCCTGCAGACCAATGCCAACTACCTGGAGCAGGTGAAGCGCCAGC
GGGGTGACCCCCAGACACAGCTGGAAGCCATGAAGCTGTACTTGGCACGGAGTGGGCTGC
AGGTGGAGGACCTGGACCAACTGAACATTATTCACATCACCGGGACCAAGGGGAAGGGCT
CCACCTGTGCCTTTGCTGAACGCATCCTCCGAAGCTACGGCCTGAAGACAGGATTCTTTA
GCTCTCCCCACCTGGTGCAGGTGCGTGAGCGGATCCGCATCAACGGACAGCCCATAAGCC
CTGAGCTCTTCACCAAGTACTTCTGGCGCCTCTACCACCGGCTGGACGAGACCAAGGATG
ACAGCAGCTGTGTCTCCATGCCCAGCTACTTCCGTTTCCTCACGCTCATGGCTTTCCACG
TCTTCCTTCAAGAGAAGGTAGACCTGGCAGTGATGGAAGTGGGCATCGGCGGGGCTTACG
ACTGCACCAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|717050|gb|AAA85815.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|717050|gb|AAA85815.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               127-244, - strand, RNAz p=0.936058
               

               
               127-244, - strand, RNAz p=0.585277

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-244, - strand, RNAz p=0.936058
               

               
               127-244, - strand, RNAz p=0.585277

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               111-244, gnl|bosTau2|chr11 (77338066-77338199)
               

               
               111-244, gnl|canFam2|chr9 (58942096-58941936)
               

               
               111-244, gnl|danRer3|chr21 (2179332-2179163)
               

               
               111-244, gnl|dasNov1|scaffold_65278 (38642-38802)
               

               
               111-244, gnl|echTel1|scaffold_280769 (9812-9966)
               

               
               111-244, gnl|fr1|chrUn (238918776-238918642)
               

               
               111-244, gnl|hg17|chr9 (127646090-127646250)
               

               
               111-244, gnl|Hg17|chr9 (127646115-127646248)
               

               
               111-244, gnl|loxAfr1|scaffold_22131 (50851-50704)
               

               
               111-244, gnl|mm7|chr2 (32700057-32699902)
               

               
               111-244, gnl|Mm7|chr2 (32700035-32699902)
               

               
               111-244, gnl|monDom2|scaffold_51 (2235236-2235380)
               

               
               111-244, gnl|oryCun1|scaffold_158830 (764-605)
               

               
               111-244, gnl|panTro1|chr11 (112461828-112461953)
               

               
               111-244, gnl|rheMac2|chr15 (98773800-98773640)
               

               
               111-244, gnl|tetNig1|chrUn_random (66142201-66142045)
               

               
               111-244, gnl|xenTro1|scaffold_82 (2125237-2125105)
               


               
               360-477, gnl|bosTau2|chr11 (77341213-77341330)
               

               
               360-477, gnl|Hg17|chr9 (127648804-127648921)
               

               
               360-477, gnl|Mm7|chr2 (32695347-32695230)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-244, gnl|bosTau2|chr11 (77338066-77338199)
               

               
               111-244, gnl|canFam2|chr9 (58942096-58941936)
               

               
               111-244, gnl|danRer3|chr21 (2179332-2179163)
               

               
               111-244, gnl|dasNov1|scaffold_65278 (38642-38802)
               

               
               111-244, gnl|echTel1|scaffold_280769 (9812-9966)
               

               
               111-244, gnl|fr1|chrUn (238918776-238918642)
               

               
               111-244, gnl|hg17|chr9 (127646090-127646250)
               

               
               111-244, gnl|Hg17|chr9 (127646115-127646248)
               

               
               111-244, gnl|loxAfr1|scaffold_22131 (50851-50704)
               

               
               111-244, gnl|mm7|chr2 (32700057-32699902)
               

               
               111-244, gnl|Mm7|chr2 (32700035-32699902)
               

               
               111-244, gnl|monDom2|scaffold_51 (2235236-2235380)
               

               
               111-244, gnl|oryCun1|scaffold_158830 (764-605)
               

               
               111-244, gnl|panTro1|chr11 (112461828-112461953)
               

               
               111-244, gnl|rheMac2|chr15 (98773800-98773640)
               

               
               111-244, gnl|tetNig1|chrUn_random (66142201-66142045)
               

               
               111-244, gnl|xenTro1|scaffold_82 (2125237-2125105)
               


               
               360-477, gnl|bosTau2|chr11 (77341213-77341330)
               

               
               360-477, gnl|Hg17|chr9 (127648804-127648921)
               

               
               360-477, gnl|Mm7|chr2 (32695347-32695230)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	127-244, - strand, RNAz p=0.936058
	127-244, - strand, RNAz p=0.585277

	111-244, gnl\|bosTau2\|chr11 (77338066-77338199)
	111-244, gnl\|canFam2\|chr9 (58942096-58941936)
	111-244, gnl\|danRer3\|chr21 (2179332-2179163)
	111-244, gnl\|dasNov1\|scaffold_65278 (38642-38802)
	111-244, gnl\|echTel1\|scaffold_280769 (9812-9966)
	111-244, gnl\|fr1\|chrUn (238918776-238918642)
	111-244, gnl\|hg17\|chr9 (127646090-127646250)
	111-244, gnl\|Hg17\|chr9 (127646115-127646248)
	111-244, gnl\|loxAfr1\|scaffold_22131 (50851-50704)
	111-244, gnl\|mm7\|chr2 (32700057-32699902)
	111-244, gnl\|Mm7\|chr2 (32700035-32699902)
	111-244, gnl\|monDom2\|scaffold_51 (2235236-2235380)
	111-244, gnl\|oryCun1\|scaffold_158830 (764-605)
	111-244, gnl\|panTro1\|chr11 (112461828-112461953)
	111-244, gnl\|rheMac2\|chr15 (98773800-98773640)
	111-244, gnl\|tetNig1\|chrUn_random (66142201-66142045)
	111-244, gnl\|xenTro1\|scaffold_82 (2125237-2125105)

	360-477, gnl\|bosTau2\|chr11 (77341213-77341330)
	360-477, gnl\|Hg17\|chr9 (127648804-127648921)
	360-477, gnl\|Mm7\|chr2 (32695347-32695230)