Non-Coding RNA Search

Ss1.1-rmcp14c_f5.5

Sequence:


               
               TGGCCTCTGTGCTGAAGCAGGACCGGGAGCGGCTCCGGGCCATGCAGAAGCAGCAGCCTC
GTGTTCTCGGAGGACCAGCGGAGGGAGCTGGGGGCCGTGCACTCCTGGGTCCGGAAGGGT
CAGCTGCCTCGGGCTCTTGACGTGATGGGCCGCATGTGCGGCATGTGGAAGTTCCCAGGC
AGGCTAAGGGTTGATTCGGAGCTGCAGCTACTGGCCTAGGCCATATCCATGGCAACACCA
GATCCCAGCCACATCTGTCACCTACGGCACAAAACTGAGCTCCAGTTGAAAGGACAGAGG
CTGAGGGCTGATCCCTTCATTGTTCCTGAGGTTCAATCTGAAGGATAGTAATTCCACTGA
GTTTGCTGCTGGGTTTTTGTAGGTCTTTTCTGGCCGTTCCTGTGCCGACATACATTCTGA
TTGTCCCCTAGTGGGGTCTGGACCCAGAGTACAATGCGTTTTCCAATCCTTCCCAGCCCA
TGTGCATTCATGTGGACGAGTGTTTTTTGGAGAAGGTTTTGGCAAGTCCCCATGGGCTGG
GGAGCAAGGGGAGCTGCAGCGGCAGGTAAGCAGTGAGCACCCTGCCTGACTCAGTACCTT
TCTTCCTCCAAGGCCTGTGTGGACTGCGGCAGTAGCACCCAAGACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTCTGTGCTGAAGCAGGACCGGGAGCGGCTCCGGGCCATGCAGAAGCAGCAGCCTC
GTGTTCTCGGAGGACCAGCGGAGGGAGCTGGGGGCCGTGCACTCCTGGGTCCGGAAGGGT
CAGCTGCCTCGGGCTCTTGACGTGATGGGCCGCATGTGCGGCATGTGGAAGTTCCCAGGC
AGGCTAAGGGTTGATTCGGAGCTGCAGCTACTGGCCTAGGCCATATCCATGGCAACACCA
GATCCCAGCCACATCTGTCACCTACGGCACAAAACTGAGCTCCAGTTGAAAGGACAGAGG
CTGAGGGCTGATCCCTTCATTGTTCCTGAGGTTCAATCTGAAGGATAGTAATTCCACTGA
GTTTGCTGCTGGGTTTTTGTAGGTCTTTTCTGGCCGTTCCTGTGCCGACATACATTCTGA
TTGTCCCCTAGTGGGGTCTGGACCCAGAGTACAATGCGTTTTCCAATCCTTCCCAGCCCA
TGTGCATTCATGTGGACGAGTGTTTTTTGGAGAAGGTTTTGGCAAGTCCCCATGGGCTGG
GGAGCAAGGGGAGCTGCAGCGGCAGGTAAGCAGTGAGCACCCTGCCTGACTCAGTACCTT
TCTTCCTCCAAGGCCTGTGTGGACTGCGGCAGTAGCACCCAAGACCCC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-148, gnl|bosTau2|chr2 (77471440-77471294)
               

               
               1-148, gnl|Hg17|chr17 (7985993-7985847)
               

               
               1-148, gnl|Mm7|chr11 (69189940-69190086)
               


               
               273-647, gnl|bosTau2|chr2 (77471257-77470852)
               

               
               273-647, gnl|Hg17|chr17 (7985752-7985349)
               

               
               273-647, gnl|Mm7|chr11 (69190131-69190689)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-148, gnl|bosTau2|chr2 (77471440-77471294)
               

               
               1-148, gnl|Hg17|chr17 (7985993-7985847)
               

               
               1-148, gnl|Mm7|chr11 (69189940-69190086)
               


               
               273-647, gnl|bosTau2|chr2 (77471257-77470852)
               

               
               273-647, gnl|Hg17|chr17 (7985752-7985349)
               

               
               273-647, gnl|Mm7|chr11 (69190131-69190689)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               pla (0.133672)

	1-148, gnl\|bosTau2\|chr2 (77471440-77471294)
	1-148, gnl\|Hg17\|chr17 (7985993-7985847)
	1-148, gnl\|Mm7\|chr11 (69189940-69190086)

	273-647, gnl\|bosTau2\|chr2 (77471257-77470852)
	273-647, gnl\|Hg17\|chr17 (7985752-7985349)
	273-647, gnl\|Mm7\|chr11 (69190131-69190689)