Non-Coding RNA Search

Ss1.1-rmcp15c_f3.5

Sequence:


               
               CATTAAAAAGCTATCCTGATTCTCAGTCTCAACTCTCCTCTCGATCAACACACAAACAAC
CAGAGTACTTCTGTGTCTCTCCGGACACTCAGGAGTTGGCTGATATCAGCAGTCTGTATA
CACCTACAACTGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTGTCA
GAGATGTGGTTGTGGCATACAGTCAAAAAACGAACTTTCTCCGTTCTATGACTGCTCTTT
GGGACCCAGCTCAGATTGAGGAACGAGACAGGCGGCGACAAAAACAGTTAGAACATCAGA
AAGCCATCATTGCTCAGGTAGAAGAGAAGCGCAGGAAGAAGCAGCTTGAAGAAGAGCAAA
GAAAGAAGGAAGAACAAGAAGAGGAGCGTCGCTTAGCACGGGAACGAGAAGAGATGCAAA
AACAGTATGAAGAAGATATACTTAAGCAAAAACAAAAGGAAGAAATCATGACTCTTAAGA
CAAATGAGCTGTTCCAGACGATGCAGAGAGCGCAAGAGCTGGCACAGAGACTGAAACAAG
AACAGAGAATCCGAGAATTGGCTCAAAAGGGACATGACACTTCCAGATTGATTAAAAATC
TTGGTGACAATTTACTTCTCTTGCCAGTTGATACAGTACAAGTGGAATATAATGTATCTA
CTAACAACATTCCAAATTCAAGACATTGCTTGGATGAATTCAGTGGTAAAATGAATACAT
ATATCAACTCTATAGCCTTTCCCAAGAAGGATACTGGTGTGCAAACAGATGACTTAAGTA
CAGGAATATTTGCCAATACAGAATCACGTTGTGGATCGGTAACAGAGAGGGAAATTATAA
ATTGTTCATCTCCTGAGATTCCTGCAGAATTTAATGAACAGTTTAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAAAAAGCTATCCTGATTCTCAGTCTCAACTCTCCTCTCGATCAACACACAAACAAC
CAGAGTACTTCTGTGTCTCTCCGGACACTCAGGAGTTGGCTGATATCAGCAGTCTGTATA
CACCTACAACTGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTGTCA
GAGATGTGGTTGTGGCATACAGTCAAAAAACGAACTTTCTCCGTTCTATGACTGCTCTTT
GGGACCCAGCTCAGATTGAGGAACGAGACAGGCGGCGACAAAAACAGTTAGAACATCAGA
AAGCCATCATTGCTCAGGTAGAAGAGAAGCGCAGGAAGAAGCAGCTTGAAGAAGAGCAAA
GAAAGAAGGAAGAACAAGAAGAGGAGCGTCGCTTAGCACGGGAACGAGAAGAGATGCAAA
AACAGTATGAAGAAGATATACTTAAGCAAAAACAAAAGGAAGAAATCATGACTCTTAAGA
CAAATGAGCTGTTCCAGACGATGCAGAGAGCGCAAGAGCTGGCACAGAGACTGAAACAAG
AACAGAGAATCCGAGAATTGGCTCAAAAGGGACATGACACTTCCAGATTGATTAAAAATC
TTGGTGACAATTTACTTCTCTTGCCAGTTGATACAGTACAAGTGGAATATAATGTATCTA
CTAACAACATTCCAAATTCAAGACATTGCTTGGATGAATTCAGTGGTAAAATGAATACAT
ATATCAACTCTATAGCCTTTCCCAAGAAGGATACTGGTGTGCAAACAGATGACTTAAGTA
CAGGAATATTTGCCAATACAGAATCACGTTGTGGATCGGTAACAGAGAGGGAAATTATAA
ATTGTTCATCTCCTGAGATTCCTGCAGAATTTAATGAACAGTTTAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55729218|emb|CAH91345.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55729218|emb|CAH91345.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-121, - strand, RNAz p=0.720412
               

               
               606-708, - strand, RNAz p=0.834933

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.720412
               

               
               606-708, - strand, RNAz p=0.834933

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               3-227, gnl|bosTau2|chr22 (32576052-32576276)
               

               
               3-227, gnl|Hg17|chr3 (56602598-56602822)
               

               
               3-227, gnl|Mm7|chr14 (24926250-24926026)
               


               
               298-462, gnl|bosTau2|chr22 (32577498-32577662)
               

               
               298-462, gnl|Hg17|chr3 (56622655-56622819)
               

               
               298-462, gnl|Mm7|chr14 (24924718-24924554)
               


               
               606-768, gnl|bosTau2|chr22 (32579774-32579936)
               

               
               606-768, gnl|canFam2|chr20 (36720848-36720556)
               

               
               606-768, gnl|dasNov1|scaffold_69811 (1070-771)
               

               
               606-768, gnl|echTel1|scaffold_314706 (99474-99738)
               

               
               606-768, gnl|hg17|chr3 (56624871-56625128)
               

               
               606-768, gnl|Hg17|chr3 (56624971-56625121)
               

               
               606-768, gnl|loxAfr1|scaffold_546 (3796-4070)
               

               
               606-768, gnl|mm7|chr14 (24923104-24922796)
               

               
               606-768, gnl|Mm7|chr14 (24922963-24922801)
               

               
               606-768, gnl|oryCun1|scaffold_162450 (899-1160)
               

               
               606-768, gnl|panTro1|chr2 (58283900-58284160)
               

               
               606-768, gnl|rheMac2|chr2 (79754394-79754130)
               

               
               606-768, gnl|rn3|chr16 (2752369-2752092)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-227, gnl|bosTau2|chr22 (32576052-32576276)
               

               
               3-227, gnl|Hg17|chr3 (56602598-56602822)
               

               
               3-227, gnl|Mm7|chr14 (24926250-24926026)
               


               
               298-462, gnl|bosTau2|chr22 (32577498-32577662)
               

               
               298-462, gnl|Hg17|chr3 (56622655-56622819)
               

               
               298-462, gnl|Mm7|chr14 (24924718-24924554)
               


               
               606-768, gnl|bosTau2|chr22 (32579774-32579936)
               

               
               606-768, gnl|canFam2|chr20 (36720848-36720556)
               

               
               606-768, gnl|dasNov1|scaffold_69811 (1070-771)
               

               
               606-768, gnl|echTel1|scaffold_314706 (99474-99738)
               

               
               606-768, gnl|hg17|chr3 (56624871-56625128)
               

               
               606-768, gnl|Hg17|chr3 (56624971-56625121)
               

               
               606-768, gnl|loxAfr1|scaffold_546 (3796-4070)
               

               
               606-768, gnl|mm7|chr14 (24923104-24922796)
               

               
               606-768, gnl|Mm7|chr14 (24922963-24922801)
               

               
               606-768, gnl|oryCun1|scaffold_162450 (899-1160)
               

               
               606-768, gnl|panTro1|chr2 (58283900-58284160)
               

               
               606-768, gnl|rheMac2|chr2 (79754394-79754130)
               

               
               606-768, gnl|rn3|chr16 (2752369-2752092)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.341297)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               spl (0.143184)

	3-121, - strand, RNAz p=0.720412
	606-708, - strand, RNAz p=0.834933

	3-227, gnl\|bosTau2\|chr22 (32576052-32576276)
	3-227, gnl\|Hg17\|chr3 (56602598-56602822)
	3-227, gnl\|Mm7\|chr14 (24926250-24926026)

	298-462, gnl\|bosTau2\|chr22 (32577498-32577662)
	298-462, gnl\|Hg17\|chr3 (56622655-56622819)
	298-462, gnl\|Mm7\|chr14 (24924718-24924554)

	606-768, gnl\|bosTau2\|chr22 (32579774-32579936)
	606-768, gnl\|canFam2\|chr20 (36720848-36720556)
	606-768, gnl\|dasNov1\|scaffold_69811 (1070-771)
	606-768, gnl\|echTel1\|scaffold_314706 (99474-99738)
	606-768, gnl\|hg17\|chr3 (56624871-56625128)
	606-768, gnl\|Hg17\|chr3 (56624971-56625121)
	606-768, gnl\|loxAfr1\|scaffold_546 (3796-4070)
	606-768, gnl\|mm7\|chr14 (24923104-24922796)
	606-768, gnl\|Mm7\|chr14 (24922963-24922801)
	606-768, gnl\|oryCun1\|scaffold_162450 (899-1160)
	606-768, gnl\|panTro1\|chr2 (58283900-58284160)
	606-768, gnl\|rheMac2\|chr2 (79754394-79754130)
	606-768, gnl\|rn3\|chr16 (2752369-2752092)