Non-Coding RNA Search

Ss1.1-rmcp18c_p6.5

Sequence:


               
               CCTTACCCAAGTACATATCCTGTGAGACCAGAAATGCAAGGCCAGAATTTGAATTCTTAT
ACAAATGGAGCATATGGCCCACCATACCCCACTGGCCCTGGCACAAACCCTGCCTCCTAC
TCCGGGGCTTATTACACACCCGGGTATGCTCAGACCAGTTACTCCACAGAGGTTCCAAGC
ACTTACCGTTCACCTGGCAACAGCCCAACCCCAGTGTCCCGTTGGATGTATCCCCAGCAG
GACTGTCAGACTGAAGCACCCCCTCTTAGGGGGCAGGTTTCAGGATATCCTGCTTCACAG
AACCCTGGAATGAGCGTGCCCCACTACCCTTATGGGGATGGTAACCGTAGTGTTCCACAA
CCAGGACCCACCGTGCGACCACAGGAGGACGCATGGGCCCCTCCTGGCACTTATGGAGTG
GGAACCCGCTACCCATGGCCTGCAGCCTCGCCCTCAGCACCACCTGGGAGTCTCTATGTG
AGCGAAAGTGCTTCGTCATGGCCTAGCAGTGGCTCTCCTCAGCCACCTCCTTCACCACCA
CCCCCGCAGCCCAAGGATTCCTCATACCCCTATAGCCAATCAGATCAAGGCATGAGCCGG
CACAGCTTTCCTTGCAGTGTCCATCAGTACGAGTCCTCGGGAACAATGAACAGTGATGAT
TCAGAGCTTTTGGATTCCCAAGTCCAGTACAGTGCCGAGCCTCAGCTGTATGGTCATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTACCCAAGTACATATCCTGTGAGACCAGAAATGCAAGGCCAGAATTTGAATTCTTAT
ACAAATGGAGCATATGGCCCACCATACCCCACTGGCCCTGGCACAAACCCTGCCTCCTAC
TCCGGGGCTTATTACACACCCGGGTATGCTCAGACCAGTTACTCCACAGAGGTTCCAAGC
ACTTACCGTTCACCTGGCAACAGCCCAACCCCAGTGTCCCGTTGGATGTATCCCCAGCAG
GACTGTCAGACTGAAGCACCCCCTCTTAGGGGGCAGGTTTCAGGATATCCTGCTTCACAG
AACCCTGGAATGAGCGTGCCCCACTACCCTTATGGGGATGGTAACCGTAGTGTTCCACAA
CCAGGACCCACCGTGCGACCACAGGAGGACGCATGGGCCCCTCCTGGCACTTATGGAGTG
GGAACCCGCTACCCATGGCCTGCAGCCTCGCCCTCAGCACCACCTGGGAGTCTCTATGTG
AGCGAAAGTGCTTCGTCATGGCCTAGCAGTGGCTCTCCTCAGCCACCTCCTTCACCACCA
CCCCCGCAGCCCAAGGATTCCTCATACCCCTATAGCCAATCAGATCAAGGCATGAGCCGG
CACAGCTTTCCTTGCAGTGTCCATCAGTACGAGTCCTCGGGAACAATGAACAGTGATGAT
TCAGAGCTTTTGGATTCCCAAGTCCAGTACAGTGCCGAGCCTCAGCTGTATGGTCATGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61818369|ref|XP_594506.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818369|ref|XP_594506.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.733977

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.733977

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-243, gnl|bosTau2|chr1 (70618860-70619100)
               

               
               1-243, gnl|Hg17|chr8 (70935059-70934742)
               

               
               1-243, gnl|Mm7|chr8 (24527820-24527623)
               


               
               534-720, gnl|bosTau2|chr1 (70619099-70619287)
               

               
               534-720, gnl|Hg17|chr8 (70934743-70934371)
               

               
               534-720, gnl|Mm7|chr8 (24527624-24524732)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-243, gnl|bosTau2|chr1 (70618860-70619100)
               

               
               1-243, gnl|Hg17|chr8 (70935059-70934742)
               

               
               1-243, gnl|Mm7|chr8 (24527820-24527623)
               


               
               534-720, gnl|bosTau2|chr1 (70619099-70619287)
               

               
               534-720, gnl|Hg17|chr8 (70934743-70934371)
               

               
               534-720, gnl|Mm7|chr8 (24527624-24524732)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               ste (0.135208)

	1-243, gnl\|bosTau2\|chr1 (70618860-70619100)
	1-243, gnl\|Hg17\|chr8 (70935059-70934742)
	1-243, gnl\|Mm7\|chr8 (24527820-24527623)

	534-720, gnl\|bosTau2\|chr1 (70619099-70619287)
	534-720, gnl\|Hg17\|chr8 (70934743-70934371)
	534-720, gnl\|Mm7\|chr8 (24527624-24524732)