Non-Coding RNA Search

Ss1.1-rmcp19c_c23.5

Sequence:


               
               GGTAGCAGGTCAAGTAAAGAGTTGGAGAGGGAGGGAGATGGGGAGACGAGACGTGCTGCC
TGGGGATACACTCGCCTGCCGCCAATCTCCCCAGCCCTGTGACTCAGACTGTTGAGAGTT
GGCGCCATCATTAGGTTCCGTGGTGGCAGCTTTAACTTTTCCCGTGGGTACCTGGAGCTC
TGGGATCGCTGGGTGGCCCCACTGCCCCCTCCTTCTTCACCTCGTAGGGAAATACAGCAC
CAAAGATATCTTCATGATAGCGCTTCTGGCTCTTAAGCTGGAAGAAATAGTCCTCCACCT
GCTCCTCATTCAGGGTCAGGGCGGTGGCCACCAGCTGCTTCAGGGTGCAGGCCACATCCC
GGGCCATGCGCACGTCCCCGCAGACATAGAGGTGGCCTTGCTCCTCGTGGAGCACGCGGA
GCACCTCGCCCGCCAGCCGCTGCCGCAGGAGGTCTTGAACATAGACCTTGGGCTGGCCAG
GCAGACGAGAATAGGCTGTGTGCACCTCGTGCAGTACCCCCTTCCGGGCCATCTCCAACA
TCTCCTCCTGGTAGAGGTGGTCTTCATATGGGCGGCGGCACCCGAACACCAGGGTCATGC
GGCCCCCCTGGAGCCCTGCAAGACCCCGTGGTCTGCAGTTACGAGGGTGGCCACCAGAGG
GCAAGCTGTGGCTCCAAATTTGAATCCCACTTCAAACCCGCAAGTATCCTGCCTAGTCCT
GTCCCACTTTACAGAAGAGGAAACTAAGGCCCAGGGCTTTCACATCATCTGTCCACACAG
GCTGAGGCAAATTTTGGAGAGGGGCCAGGAAACATTTGTCGGTAGGTGGAACAATTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGCAGGTCAAGTAAAGAGTTGGAGAGGGAGGGAGATGGGGAGACGAGACGTGCTGCC
TGGGGATACACTCGCCTGCCGCCAATCTCCCCAGCCCTGTGACTCAGACTGTTGAGAGTT
GGCGCCATCATTAGGTTCCGTGGTGGCAGCTTTAACTTTTCCCGTGGGTACCTGGAGCTC
TGGGATCGCTGGGTGGCCCCACTGCCCCCTCCTTCTTCACCTCGTAGGGAAATACAGCAC
CAAAGATATCTTCATGATAGCGCTTCTGGCTCTTAAGCTGGAAGAAATAGTCCTCCACCT
GCTCCTCATTCAGGGTCAGGGCGGTGGCCACCAGCTGCTTCAGGGTGCAGGCCACATCCC
GGGCCATGCGCACGTCCCCGCAGACATAGAGGTGGCCTTGCTCCTCGTGGAGCACGCGGA
GCACCTCGCCCGCCAGCCGCTGCCGCAGGAGGTCTTGAACATAGACCTTGGGCTGGCCAG
GCAGACGAGAATAGGCTGTGTGCACCTCGTGCAGTACCCCCTTCCGGGCCATCTCCAACA
TCTCCTCCTGGTAGAGGTGGTCTTCATATGGGCGGCGGCACCCGAACACCAGGGTCATGC
GGCCCCCCTGGAGCCCTGCAAGACCCCGTGGTCTGCAGTTACGAGGGTGGCCACCAGAGG
GCAAGCTGTGGCTCCAAATTTGAATCCCACTTCAAACCCGCAAGTATCCTGCCTAGTCCT
GTCCCACTTTACAGAAGAGGAAACTAAGGCCCAGGGCTTTCACATCATCTGTCCACACAG
GCTGAGGCAAATTTTGGAGAGGGGCCAGGAAACATTTGTCGGTAGGTGGAACAATTCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.917273

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.917273

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-293, gnl|bosTau2|chr19 (12816646-12816932)
               

               
               1-293, gnl|Hg17|chr17 (23108229-23108528)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-293, gnl|bosTau2|chr19 (12816646-12816932)
               

               
               1-293, gnl|Hg17|chr17 (23108229-23108528)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               ute (0.132784)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               ute (0.132784)
               

               
               med (0.116252)

	1-293, gnl\|bosTau2\|chr19 (12816646-12816932)
	1-293, gnl\|Hg17\|chr17 (23108229-23108528)