Non-Coding RNA Search

Ss1.1-rmcp19c_c9.5

Sequence:


               
               TCTAACTATGGTCCAATGAAGAGTGGAAACTTGGGTGGTAGCAGGAACATGGGGGGACCA
TATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGGGGGGGTTATGGAGGGAGA
AGCCGATATTGAGCTTCTTCCTATTTGGCCATGGGCTTCACTGTATAAATAGGAGAGGAT
GAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATCGAAATAACAATGTTAAGGAAACTC
TTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGAAGACACCAGAGCAGATGCAGA
GAGCCATTTGGTGAATGGATGGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGAT
TGTAAAAAAAAAAAAATGCCTTGGAGACAGTTTCTTAGCTTTTAAATGGTGGTTTCTTTC
TAGTGGTCTTGGTAAGAGTATAGAAGCATTCCTTCTTGGATAATGTTAAATTGGTAAGTT
TCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTGGAAAAGCTATTAGCC
AGGATCAGGGTGTAATAAGACATAACGTTTTTCCTTTAAAAAAATTTAAGTGCGTGTGTA
GAGTTAAGAAGCTGTGGTACATTTATGATTTAATAAAATAATTCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAACTATGGTCCAATGAAGAGTGGAAACTTGGGTGGTAGCAGGAACATGGGGGGACCA
TATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGGGGGGGTTATGGAGGGAGA
AGCCGATATTGAGCTTCTTCCTATTTGGCCATGGGCTTCACTGTATAAATAGGAGAGGAT
GAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATCGAAATAACAATGTTAAGGAAACTC
TTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGAAGACACCAGAGCAGATGCAGA
GAGCCATTTGGTGAATGGATGGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGAT
TGTAAAAAAAAAAAAATGCCTTGGAGACAGTTTCTTAGCTTTTAAATGGTGGTTTCTTTC
TAGTGGTCTTGGTAAGAGTATAGAAGCATTCCTTCTTGGATAATGTTAAATTGGTAAGTT
TCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTGGAAAAGCTATTAGCC
AGGATCAGGGTGTAATAAGACATAACGTTTTTCCTTTAAAAAAATTTAAGTGCGTGTGTA
GAGTTAAGAAGCTGTGGTACATTTATGATTTAATAAAATAATTCTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               107-226, - strand, RNAz p=0.889772

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-226, - strand, RNAz p=0.889772

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               17-648, gnl|bosTau2|chr7 (11455754-11456366)
               

               
               17-648, gnl|Hg17|chr7 (26006164-26004710)
               

               
               17-648, gnl|Mm7|chr10 (72809887-72810512)
               


               
               249-472, gnl|bosTau2|chr7 (11574094-11573883)
               

               
               249-472, gnl|Hg17|chr7 (26005142-26004887)
               

               
               249-472, gnl|Mm7|chr10 (72810079-72810335)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-648, gnl|bosTau2|chr7 (11455754-11456366)
               

               
               17-648, gnl|Hg17|chr7 (26006164-26004710)
               

               
               17-648, gnl|Mm7|chr10 (72809887-72810512)
               


               
               249-472, gnl|bosTau2|chr7 (11574094-11573883)
               

               
               249-472, gnl|Hg17|chr7 (26005142-26004887)
               

               
               249-472, gnl|Mm7|chr10 (72810079-72810335)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.341297)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

	17-648, gnl\|bosTau2\|chr7 (11455754-11456366)
	17-648, gnl\|Hg17\|chr7 (26006164-26004710)
	17-648, gnl\|Mm7\|chr10 (72809887-72810512)

	249-472, gnl\|bosTau2\|chr7 (11574094-11573883)
	249-472, gnl\|Hg17\|chr7 (26005142-26004887)
	249-472, gnl\|Mm7\|chr10 (72810079-72810335)