Non-Coding RNA Search

Ss1.1-rmcp21c_a12.5

Sequence:


               
               TGAAAGGACACCAGGATGTCGCTAAAGGTGAGGGACAGAGGGTGACCTTGGGTTAGCGGT
TAGCCTCACACACCCCTCAGGGGGATGCGAGCGAGGCTAGGACCAGCTGGGGTCGGACGG
GAGAGAGTTGGGGTCAGGGTGGGCCACTCTGGAGTGAGGACGGATCCCAGAGGGTTCCTA
GGGCCTGAGGGTGGGGACACAGGCCTTGCTGGGAGGAAGAAGTGATGGTGCCGCAGCTTG
TCCATCACGAGCGATCACACTGCTGAAGTCCCCACCTGCTTCAGGGACCCTGGTAGCATG
AGGGGCTGGGGCTAGGGGCCTCTTTCAGAGAAAAACCACCCTCAGGTCACTGGGTGATGC
AGCGGCCGAGAAAAATCCACTTCCACCTGCATTTCTCCCAAAGGGCCAGCAGGAGGCAGC
CTTGGGGAGCTGCTGCTCATCCTGGCGGTCCCCGCCTTCTTCTCCCCAGTCCTCTCAACT
AACACTAGAGATTGCCTGTGCCCTGCCTTTGCCTCCTGTAGAGTTCGGCTCTGGCTCTCA
ATAAACGCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAGGACACCAGGATGTCGCTAAAGGTGAGGGACAGAGGGTGACCTTGGGTTAGCGGT
TAGCCTCACACACCCCTCAGGGGGATGCGAGCGAGGCTAGGACCAGCTGGGGTCGGACGG
GAGAGAGTTGGGGTCAGGGTGGGCCACTCTGGAGTGAGGACGGATCCCAGAGGGTTCCTA
GGGCCTGAGGGTGGGGACACAGGCCTTGCTGGGAGGAAGAAGTGATGGTGCCGCAGCTTG
TCCATCACGAGCGATCACACTGCTGAAGTCCCCACCTGCTTCAGGGACCCTGGTAGCATG
AGGGGCTGGGGCTAGGGGCCTCTTTCAGAGAAAAACCACCCTCAGGTCACTGGGTGATGC
AGCGGCCGAGAAAAATCCACTTCCACCTGCATTTCTCCCAAAGGGCCAGCAGGAGGCAGC
CTTGGGGAGCTGCTGCTCATCCTGGCGGTCCCCGCCTTCTTCTCCCCAGTCCTCTCAACT
AACACTAGAGATTGCCTGTGCCCTGCCTTTGCCTCCTGTAGAGTTCGGCTCTGGCTCTCA
ATAAACGCTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               90-205, + strand, RNAz p=0.999998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-205, + strand, RNAz p=0.999998

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               94-188, + strand, RNAmicro p=0.985611

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               94-188, + strand, RNAmicro p=0.985611

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               90-551, gnl|bosTau2|chr7 (39263316-39263786)
               

               
               90-551, gnl|Hg17|chr5 (150018485-150018955)
               

               
               90-551, gnl|Mm7|chr18 (60983861-60983434)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-551, gnl|bosTau2|chr7 (39263316-39263786)
               

               
               90-551, gnl|Hg17|chr5 (150018485-150018955)
               

               
               90-551, gnl|Mm7|chr18 (60983861-60983434)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               jej (0.0989218)

	90-551, gnl\|bosTau2\|chr7 (39263316-39263786)
	90-551, gnl\|Hg17\|chr5 (150018485-150018955)
	90-551, gnl\|Mm7\|chr18 (60983861-60983434)

	elu (0.385356)
	mcp (0.170648)
	pty (0.142714)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	jej (0.0989218)