Ss1.1-rmcp21c_c20.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGGTGCGGGCTCGGGGCTGACATCGACCCTGCGCGGGCGGCCCCGGACTTCAGAGGC CTGTCGGGGAGAGCAGTCGATAAGGAAACCCGGACGACACTGCGCCTTTCCTTTTTTCTA GCGGCCGGGAAGATGGCGGATATTCAGACCGAGCGTGCCTACCAAAAGCAGCCGACCATC TTTCAAAATAAGAAGAGGGTCCTGCTTGGCGAAACTGGCAAGGAGAAGCTCCCGCGATAC TACAAGAACATCGGCCTGGGCTTCAAGACACCGAAGGAGGCCATCGAGGGCACCTACATT GACAAGAAATGCCCTTTTACTGGTAACGTCTCCATCCGAGGGCGGATCCTGTCTGGCGTG GTGACCAAGATGAAGATGCAGCGGACCATCGTCATCCGCCGAGACTACCTCCACTACATC CGAAAGTACAACCGCTTTGAGAAGCGCCACAAGAACATGTCCGTGCACCTCTCCCCCTGC TTCAGGGACGTCCAGATCGGCGACATTGTCACAGTGGGCGAGTGTCGGCCCCTGAGCAAG ACGGTGCGCTTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCAGTTCCAG AAGTTCTGAGACTGCACCCCATCCACTGCCCTGAACAAAATAAAGCTATTTTCCCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGGTGCGGGCTCGGGGCTGACATCGACCCTGCGCGGGCGGCCCCGGACTTCAGAGGC CTGTCGGGGAGAGCAGTCGATAAGGAAACCCGGACGACACTGCGCCTTTCCTTTTTTCTA GCGGCCGGGAAGATGGCGGATATTCAGACCGAGCGTGCCTACCAAAAGCAGCCGACCATC TTTCAAAATAAGAAGAGGGTCCTGCTTGGCGAAACTGGCAAGGAGAAGCTCCCGCGATAC TACAAGAACATCGGCCTGGGCTTCAAGACACCGAAGGAGGCCATCGAGGGCACCTACATT GACAAGAAATGCCCTTTTACTGGTAACGTCTCCATCCGAGGGCGGATCCTGTCTGGCGTG GTGACCAAGATGAAGATGCAGCGGACCATCGTCATCCGCCGAGACTACCTCCACTACATC CGAAAGTACAACCGCTTTGAGAAGCGCCACAAGAACATGTCCGTGCACCTCTCCCCCTGC TTCAGGGACGTCCAGATCGGCGACATTGTCACAGTGGGCGAGTGTCGGCCCCTGAGCAAG ACGGTGCGCTTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCAGTTCCAG AAGTTCTGAGACTGCACCCCATCCACTGCCCTGAACAAAATAAAGCTATTTTCCCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 524-642, + strand, RNAz p=0.506898 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 524-642, + strand, RNAz p=0.506898 |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 146-280, gnl|bosTau2|chr18 (48637426-48637560) | |
| 146-280, gnl|canFam2|chr1 (109889769-109889665) | |
| 146-280, gnl|canFam2|chr1 (109889772-109889634) | |
| 146-280, gnl|canFam2|chr1 (109889769-109889484) | |
| 146-280, gnl|canFam2|chr8 (42762486-42762355) | |
| 146-280, gnl|canFam2|chr8 (42762352-42762490) | |
| 146-280, gnl|canFam2|chr8 (42762354-42762424) | |
| 146-280, gnl|danRer3|chrNA (43785424-43785530) | |
| 146-280, gnl|danRer3|chrNA (43785424-43785558) | |
| 146-280, gnl|danRer3|chrNA (43785561-43785421) | |
| 146-280, gnl|danRer3|chrUn (6051278-6051416) | |
| 146-280, gnl|danRer3|chrUn (6051277-6051412) | |
| 146-280, gnl|danRer3|chrUn (6051413-6051343) | |
| 146-280, gnl|dasNov1|scaffold_105859 (1828-1691) | |
| 146-280, gnl|dasNov1|scaffold_105859 (1827-1690) | |
| 146-280, gnl|dasNov1|scaffold_14433 (1833-1733) | |
| 146-280, gnl|dasNov1|scaffold_14433 (1833-1702) | |
| 146-280, gnl|dasNov1|scaffold_14433 (1699-1838) | |
| 146-280, gnl|dasNov1|scaffold_72870 (5205-5298) | |
| 146-280, gnl|echTel1|scaffold_147360 (539-636) | |
| 146-280, gnl|echTel1|scaffold_292126 (3138-3269) | |
| 146-280, gnl|echTel1|scaffold_292126 (3272-3133) | |
| 146-280, gnl|echTel1|scaffold_292126 (3137-3274) | |
| 146-280, gnl|echTel1|scaffold_292126 (3270-3177) | |
| 146-280, gnl|echTel1|scaffold_319458 (80928-81067) | |
| 146-280, gnl|fr1|chrUn (22620607-22620467) | |
| 146-280, gnl|fr1|chrUn (22620464-22620611) | |
| 146-280, gnl|fr1|chrUn (22620611-22620463) | |
| 146-280, gnl|fr1|chrUn (22620608-22620467) | |
| 146-280, gnl|hg17|chr1 (148543224-148543332) | |
| 146-280, gnl|hg17|chr12 (63076585-63076717) | |
| 146-280, gnl|hg17|chr19 (54692258-54692397) | |
| 146-280, gnl|Hg17|chr19 (54692261-54692395) | |
| 146-280, gnl|hg17|chr20 (11274360-11274496) | |
| 146-280, gnl|hg17|chr9 (32717388-32717462) | |
| 146-280, gnl|hg17|chrX (39480909-39481042) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16378-16478) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16378-16509) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16512-16373) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16378-16509) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16377-16510) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16510-16417) | |
| 146-280, gnl|mm7|chr3 (57847929-57847798) | |
| 146-280, gnl|mm7|chr3 (57847797-57847866) | |
| 146-280, gnl|mm7|chr7 (41299285-41299146) | |
| 146-280, gnl|Mm7|chr7 (41299280-41299146) | |
| 146-280, gnl|mm7|chr9 (59499148-59499044) | |
| 146-280, gnl|mm7|chr9 (59499014-59499153) | |
| 146-280, gnl|mm7|chr9 (59499149-59499012) | |
| 146-280, gnl|monDom2|scaffold_0 (31409747-31409884) | |
| 146-280, gnl|monDom2|scaffold_105 (4125384-4125518) | |
| 146-280, gnl|monDom2|scaffold_105 (4125522-4125383) | |
| 146-280, gnl|monDom2|scaffold_105 (4125386-4125479) | |
| 146-280, gnl|monDom2|scaffold_125 (2317686-2317778) | |
| 146-280, gnl|monDom2|scaffold_125 (2317686-2317819) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10049-10149) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10049-10180) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10183-10044) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10049-10180) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10048-10185) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10181-10088) | |
| 146-280, gnl|panTro1|chr1 (130296377-130296485) | |
| 146-280, gnl|panTro1|chr10 (64436430-64436562) | |
| 146-280, gnl|panTro1|chr11 (33209256-33209330) | |
| 146-280, gnl|panTro1|chr20 (52053629-52053768) | |
| 146-280, gnl|panTro1|chr21 (11138803-11138939) | |
| 146-280, gnl|panTro1|chrX (40700220-40700356) | |
| 146-280, gnl|rheMac2|chr1 (130207305-130207413) | |
| 146-280, gnl|rheMac2|chr10 (44632335-44632472) | |
| 146-280, gnl|rheMac2|chr11 (61409610-61409708) | |
| 146-280, gnl|rheMac2|chr15 (44497836-44497728) | |
| 146-280, gnl|rheMac2|chr19 (55761449-55761588) | |
| 146-280, gnl|rheMac2|chr19 (55761453-55761589) | |
| 146-280, gnl|rn3|chr1 (95676208-95676071) | |
| 146-280, gnl|rn3|chr1 (95676207-95676072) | |
| 146-280, gnl|rn3|chr17 (40000553-40000692) | |
| 146-280, gnl|rn3|chr19 (23038084-23037961) | |
| 146-280, gnl|rn3|chr19 (23037960-23038029) | |
| 146-280, gnl|rn3|chr5 (146419705-146419809) | |
| 146-280, gnl|tetNig1|chr3 (12261162-12261022) | |
| 146-280, gnl|tetNig1|chr3 (12261019-12261162) | |
| 146-280, gnl|tetNig1|chr3 (12261166-12261018) | |
| 146-280, gnl|tetNig1|chr3 (12261163-12261017) | |
| 146-280, gnl|tetNig1|chr3 (12261021-12261065) | |
| 146-280, gnl|xenTro1|scaffold_713 (350153-350019) | |
| 146-280, gnl|xenTro1|scaffold_713 (350015-350154) | |
| 146-280, gnl|xenTro1|scaffold_713 (350018-350155) | |
| 484-689, gnl|bosTau2|chr16 (34814263-34814064) | |
| 484-689, gnl|Hg17|chr1 (237126046-237125841) | |
| 484-689, gnl|Mm7|chr7 (84286488-84286297) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-280, gnl|bosTau2|chr18 (48637426-48637560) | |
| 146-280, gnl|canFam2|chr1 (109889769-109889665) | |
| 146-280, gnl|canFam2|chr1 (109889772-109889634) | |
| 146-280, gnl|canFam2|chr1 (109889769-109889484) | |
| 146-280, gnl|canFam2|chr8 (42762486-42762355) | |
| 146-280, gnl|canFam2|chr8 (42762352-42762490) | |
| 146-280, gnl|canFam2|chr8 (42762354-42762424) | |
| 146-280, gnl|danRer3|chrNA (43785424-43785530) | |
| 146-280, gnl|danRer3|chrNA (43785424-43785558) | |
| 146-280, gnl|danRer3|chrNA (43785561-43785421) | |
| 146-280, gnl|danRer3|chrUn (6051278-6051416) | |
| 146-280, gnl|danRer3|chrUn (6051277-6051412) | |
| 146-280, gnl|danRer3|chrUn (6051413-6051343) | |
| 146-280, gnl|dasNov1|scaffold_105859 (1828-1691) | |
| 146-280, gnl|dasNov1|scaffold_105859 (1827-1690) | |
| 146-280, gnl|dasNov1|scaffold_14433 (1833-1733) | |
| 146-280, gnl|dasNov1|scaffold_14433 (1833-1702) | |
| 146-280, gnl|dasNov1|scaffold_14433 (1699-1838) | |
| 146-280, gnl|dasNov1|scaffold_72870 (5205-5298) | |
| 146-280, gnl|echTel1|scaffold_147360 (539-636) | |
| 146-280, gnl|echTel1|scaffold_292126 (3138-3269) | |
| 146-280, gnl|echTel1|scaffold_292126 (3272-3133) | |
| 146-280, gnl|echTel1|scaffold_292126 (3137-3274) | |
| 146-280, gnl|echTel1|scaffold_292126 (3270-3177) | |
| 146-280, gnl|echTel1|scaffold_319458 (80928-81067) | |
| 146-280, gnl|fr1|chrUn (22620607-22620467) | |
| 146-280, gnl|fr1|chrUn (22620464-22620611) | |
| 146-280, gnl|fr1|chrUn (22620611-22620463) | |
| 146-280, gnl|fr1|chrUn (22620608-22620467) | |
| 146-280, gnl|hg17|chr1 (148543224-148543332) | |
| 146-280, gnl|hg17|chr12 (63076585-63076717) | |
| 146-280, gnl|hg17|chr19 (54692258-54692397) | |
| 146-280, gnl|Hg17|chr19 (54692261-54692395) | |
| 146-280, gnl|hg17|chr20 (11274360-11274496) | |
| 146-280, gnl|hg17|chr9 (32717388-32717462) | |
| 146-280, gnl|hg17|chrX (39480909-39481042) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16378-16478) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16378-16509) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16512-16373) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16378-16509) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16377-16510) | |
| 146-280, gnl|loxAfr1|scaffold_16166 (16510-16417) | |
| 146-280, gnl|mm7|chr3 (57847929-57847798) | |
| 146-280, gnl|mm7|chr3 (57847797-57847866) | |
| 146-280, gnl|mm7|chr7 (41299285-41299146) | |
| 146-280, gnl|Mm7|chr7 (41299280-41299146) | |
| 146-280, gnl|mm7|chr9 (59499148-59499044) | |
| 146-280, gnl|mm7|chr9 (59499014-59499153) | |
| 146-280, gnl|mm7|chr9 (59499149-59499012) | |
| 146-280, gnl|monDom2|scaffold_0 (31409747-31409884) | |
| 146-280, gnl|monDom2|scaffold_105 (4125384-4125518) | |
| 146-280, gnl|monDom2|scaffold_105 (4125522-4125383) | |
| 146-280, gnl|monDom2|scaffold_105 (4125386-4125479) | |
| 146-280, gnl|monDom2|scaffold_125 (2317686-2317778) | |
| 146-280, gnl|monDom2|scaffold_125 (2317686-2317819) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10049-10149) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10049-10180) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10183-10044) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10049-10180) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10048-10185) | |
| 146-280, gnl|oryCun1|scaffold_108719 (10181-10088) | |
| 146-280, gnl|panTro1|chr1 (130296377-130296485) | |
| 146-280, gnl|panTro1|chr10 (64436430-64436562) | |
| 146-280, gnl|panTro1|chr11 (33209256-33209330) | |
| 146-280, gnl|panTro1|chr20 (52053629-52053768) | |
| 146-280, gnl|panTro1|chr21 (11138803-11138939) | |
| 146-280, gnl|panTro1|chrX (40700220-40700356) | |
| 146-280, gnl|rheMac2|chr1 (130207305-130207413) | |
| 146-280, gnl|rheMac2|chr10 (44632335-44632472) | |
| 146-280, gnl|rheMac2|chr11 (61409610-61409708) | |
| 146-280, gnl|rheMac2|chr15 (44497836-44497728) | |
| 146-280, gnl|rheMac2|chr19 (55761449-55761588) | |
| 146-280, gnl|rheMac2|chr19 (55761453-55761589) | |
| 146-280, gnl|rn3|chr1 (95676208-95676071) | |
| 146-280, gnl|rn3|chr1 (95676207-95676072) | |
| 146-280, gnl|rn3|chr17 (40000553-40000692) | |
| 146-280, gnl|rn3|chr19 (23038084-23037961) | |
| 146-280, gnl|rn3|chr19 (23037960-23038029) | |
| 146-280, gnl|rn3|chr5 (146419705-146419809) | |
| 146-280, gnl|tetNig1|chr3 (12261162-12261022) | |
| 146-280, gnl|tetNig1|chr3 (12261019-12261162) | |
| 146-280, gnl|tetNig1|chr3 (12261166-12261018) | |
| 146-280, gnl|tetNig1|chr3 (12261163-12261017) | |
| 146-280, gnl|tetNig1|chr3 (12261021-12261065) | |
| 146-280, gnl|xenTro1|scaffold_713 (350153-350019) | |
| 146-280, gnl|xenTro1|scaffold_713 (350015-350154) | |
| 146-280, gnl|xenTro1|scaffold_713 (350018-350155) | |
| 484-689, gnl|bosTau2|chr16 (34814263-34814064) | |
| 484-689, gnl|Hg17|chr1 (237126046-237125841) | |
| 484-689, gnl|Mm7|chr7 (84286488-84286297) |
| Expressed library(ies): 78 entry(ies) | More info |
| Expressed library(ies): 78 entry(ies) | Help | Less info |
| cag (11.3396) | |
| elu (8.8632) | |
| cly (8.083) | |
| ese (7.71664) | |
| mcp (7.67918) | |
| eep (7.47641) | |
| lnt (6.9731) | |
| csp (6.93101) | |
| eje (6.81953) | |
| ecc (6.78707) | |
| cbl (6.54345) | |
| nlu (5.94211) | |
| med (5.92885) | |
| hlv (5.431) | |
| eru (5.40216) | |
| nco (5.17548) | |
| nje (5.14352) | |
| cov (5.02181) | |
| amn (5.01253) | |
| ebs (4.96865) | |
| nep (4.59812) | |
| fty (4.57183) | |
| cga (4.46553) | |
| nca (4.24309) | |
| eye (3.92157) | |
| col (3.90016) | |
| ece (3.89819) | |
| ill (3.86304) | |
| ton (3.6855) | |
| cli (3.51467) | |
| jca (2.96296) | |
| nmm (2.92165) | |
| pty (2.85429) | |
| duo (2.76482) | |
| fce (2.71592) | |
| jej (2.57197) | |
| mas (2.52366) | |
| hyp (2.42822) | |
| nbm (1.98649) | |
| cje (1.98282) | |
| eli (1.82177) | |
| fcc (1.78006) | |
| cut (1.69924) | |
| fli (1.62305) | |
| bla (1.61651) | |
| ute (1.59341) | |
| fbs (1.57812) | |
| ova (1.54959) | |
| pro (1.5361) | |
| nms (1.49701) | |
| cst (1.26033) | |
| ssp (1.21968) | |
| hea (1.02249) | |
| thg (1.01433) | |
| sag (0.913576) | |
| fat (0.884564) | |
| rec (0.865351) | |
| fhi (0.847889) | |
| pgl (0.7109) | |
| cki (0.660939) | |
| sme (0.610874) | |
| isp (0.601504) | |
| aor (0.585823) | |
| pan (0.471921) | |
| sin (0.349895) | |
| spc (0.340097) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| lin (0.145603) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| cty (0.10408) |
| Expressed library(ies): 78 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (11.3396) | |
| elu (8.8632) | |
| cly (8.083) | |
| ese (7.71664) | |
| mcp (7.67918) | |
| eep (7.47641) | |
| lnt (6.9731) | |
| csp (6.93101) | |
| eje (6.81953) | |
| ecc (6.78707) | |
| cbl (6.54345) | |
| nlu (5.94211) | |
| med (5.92885) | |
| hlv (5.431) | |
| eru (5.40216) | |
| nco (5.17548) | |
| nje (5.14352) | |
| cov (5.02181) | |
| amn (5.01253) | |
| ebs (4.96865) | |
| nep (4.59812) | |
| fty (4.57183) | |
| cga (4.46553) | |
| nca (4.24309) | |
| eye (3.92157) | |
| col (3.90016) | |
| ece (3.89819) | |
| ill (3.86304) | |
| ton (3.6855) | |
| cli (3.51467) | |
| jca (2.96296) | |
| nmm (2.92165) | |
| pty (2.85429) | |
| duo (2.76482) | |
| fce (2.71592) | |
| jej (2.57197) | |
| mas (2.52366) | |
| hyp (2.42822) | |
| nbm (1.98649) | |
| cje (1.98282) | |
| eli (1.82177) | |
| fcc (1.78006) | |
| cut (1.69924) | |
| fli (1.62305) | |
| bla (1.61651) | |
| ute (1.59341) | |
| fbs (1.57812) | |
| ova (1.54959) | |
| pro (1.5361) | |
| nms (1.49701) | |
| cst (1.26033) | |
| ssp (1.21968) | |
| hea (1.02249) | |
| thg (1.01433) | |
| sag (0.913576) | |
| fat (0.884564) | |
| rec (0.865351) | |
| fhi (0.847889) | |
| pgl (0.7109) | |
| cki (0.660939) | |
| sme (0.610874) | |
| isp (0.601504) | |
| aor (0.585823) | |
| pan (0.471921) | |
| sin (0.349895) | |
| spc (0.340097) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| lin (0.145603) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| cty (0.10408) |