Non-Coding RNA Search

Ss1.1-rmcp21c_g18.5

Sequence:


               
               CAGGAGTGTCCCCACCATGGCCTGGACGGTGCTTCTGATCGGGCTCCTCGCTGTCGGCTC
AGGGGTGGATTCTCAGACTGTGATCCAGGAGCCGGCGATGTCAGTGTCTCTTGGAGGGAC
CGTCACACTCACCTGTGCCTATAGCTCTGGGTCAGTCACTAGTAGTAACTACCCTGGCTG
GTTCCAGCAGACACCAGGCCAGCCTCCTCGAACTGTTATCTACAACACAAACAGCCGCCC
GACTGGGGTCCCCAGTCGCTTCTCTGGAGCCATCTCTGGGAACAAAGCCACCCTCACCAT
CACGGGGGCCCAGGCTGAGGACGAGGCCGACTACTTCTGTGCTCTGTAGAAAAGTGGTGG
TACTATTTTCGGCGGCGGTGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCC
CACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGT
GTGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGTGTCCCCACCATGGCCTGGACGGTGCTTCTGATCGGGCTCCTCGCTGTCGGCTC
AGGGGTGGATTCTCAGACTGTGATCCAGGAGCCGGCGATGTCAGTGTCTCTTGGAGGGAC
CGTCACACTCACCTGTGCCTATAGCTCTGGGTCAGTCACTAGTAGTAACTACCCTGGCTG
GTTCCAGCAGACACCAGGCCAGCCTCCTCGAACTGTTATCTACAACACAAACAGCCGCCC
GACTGGGGTCCCCAGTCGCTTCTCTGGAGCCATCTCTGGGAACAAAGCCACCCTCACCAT
CACGGGGGCCCAGGCTGAGGACGAGGCCGACTACTTCTGTGCTCTGTAGAAAAGTGGTGG
TACTATTTTCGGCGGCGGTGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCC
CACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGT
GTGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2765427|emb|CAA75033.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2765427|emb|CAA75033.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               401-539, gnl|bosTau2|chr17 (41403615-41403753)
               

               
               401-539, gnl|Hg17|chr22 (21586260-21586398)
               

               
               401-539, gnl|Mm7|chr16_random (2587805-2587943)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               401-539, gnl|bosTau2|chr17 (41403615-41403753)
               

               
               401-539, gnl|Hg17|chr22 (21586260-21586398)
               

               
               401-539, gnl|Mm7|chr16_random (2587805-2587943)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               csp (0.967118)
               

               
               cly (0.965135)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.967118)
               

               
               cly (0.965135)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

	401-539, gnl\|bosTau2\|chr17 (41403615-41403753)
	401-539, gnl\|Hg17\|chr22 (21586260-21586398)
	401-539, gnl\|Mm7\|chr16_random (2587805-2587943)

	csp (0.967118)
	cly (0.965135)
	mcp (0.170648)
	lnt (0.142308)
	jej (0.0989218)