Non-Coding RNA Search

Ss1.1-rmcp22c_k24.5

Sequence:


               
               TGAGGCTAGAGCAGAGCGAGACCCGGAACGTGGACATCGGTTTTACTGTATTCATCGTGA
AAACACCCCTGTTGCAAAGATGGTCAACGTACCTAAAACCCGAAGGACTTTCTGTAAGAA
GTGTGGAAAACATCAGCCTCACAAAGTGACCCAGTATAAGAAGGGCAAGGATTCCCTCTA
TGCCCAGGGAAAGAGGCGCTATGATCGGAAACAGAGTGGCTATGGCGGGCAAACAAAGCC
AATTTTCCGGAAGAAGGCTAAAACCACAAAGAAGATTGTGCTGAGGCTTGAATGTGTTGA
GCCCAACTGCAGATCCAAGAGGATGCTGGCAATTAAGAGATGCAAGCATTTTGAACTTGG
AGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGCCTTGAGAATTTTTTTTAT
TCTATATTTGAGAGGAAGGTGTTGAAGCCATAGGGGGAAAAAAAATGCCTGTATGAGAAT
AAATACAGTGATACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGCTAGAGCAGAGCGAGACCCGGAACGTGGACATCGGTTTTACTGTATTCATCGTGA
AAACACCCCTGTTGCAAAGATGGTCAACGTACCTAAAACCCGAAGGACTTTCTGTAAGAA
GTGTGGAAAACATCAGCCTCACAAAGTGACCCAGTATAAGAAGGGCAAGGATTCCCTCTA
TGCCCAGGGAAAGAGGCGCTATGATCGGAAACAGAGTGGCTATGGCGGGCAAACAAAGCC
AATTTTCCGGAAGAAGGCTAAAACCACAAAGAAGATTGTGCTGAGGCTTGAATGTGTTGA
GCCCAACTGCAGATCCAAGAGGATGCTGGCAATTAAGAGATGCAAGCATTTTGAACTTGG
AGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGCCTTGAGAATTTTTTTTAT
TCTATATTTGAGAGGAAGGTGTTGAAGCCATAGGGGGAAAAAAAATGCCTGTATGAGAAT
AAATACAGTGATACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13592061|ref|NP_112367.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13592061|ref|NP_112367.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-431, - strand, RNAz p=0.663411

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-431, - strand, RNAz p=0.663411

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               16-524, gnl|bosTau2|chr11 (12047825-12048327)
               

               
               16-524, gnl|Hg17|chr5 (18085333-18085847)
               

               
               16-524, gnl|Mm7|chr6 (136503999-136504436)
               


               
               45-493, gnl|bosTau2|chr10 (29975195-29974753)
               

               
               45-493, gnl|Hg17|chr14 (49155612-49155168)
               

               
               45-493, gnl|Mm7|chr12 (67124666-67124241)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-524, gnl|bosTau2|chr11 (12047825-12048327)
               

               
               16-524, gnl|Hg17|chr5 (18085333-18085847)
               

               
               16-524, gnl|Mm7|chr6 (136503999-136504436)
               


               
               45-493, gnl|bosTau2|chr10 (29975195-29974753)
               

               
               45-493, gnl|Hg17|chr14 (49155612-49155168)
               

               
               45-493, gnl|Mm7|chr12 (67124666-67124241)

Expressed library(ies): 58 entry(ies)

More info

Expressed library(ies): 58 entry(ies)

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               csk (0.844476)
               

               
               col (0.780031)
               

               
               ova (0.774793)
               

               
               sto (0.719295)
               

               
               ssp (0.677599)
               

               
               nje (0.66368)
               

               
               mga (0.64082)
               

               
               tes (0.623441)
               

               
               pgl (0.592417)
               

               
               med (0.58126)
               

               
               nlu (0.575043)
               

               
               pty (0.570858)
               

               
               nca (0.547495)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               mcp (0.511945)
               

               
               eye (0.511509)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               eli (0.303628)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.844476)
               

               
               col (0.780031)
               

               
               ova (0.774793)
               

               
               sto (0.719295)
               

               
               ssp (0.677599)
               

               
               nje (0.66368)
               

               
               mga (0.64082)
               

               
               tes (0.623441)
               

               
               pgl (0.592417)
               

               
               med (0.58126)
               

               
               nlu (0.575043)
               

               
               pty (0.570858)
               

               
               nca (0.547495)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               mcp (0.511945)
               

               
               eye (0.511509)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               eli (0.303628)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	16-524, gnl\|bosTau2\|chr11 (12047825-12048327)
	16-524, gnl\|Hg17\|chr5 (18085333-18085847)
	16-524, gnl\|Mm7\|chr6 (136503999-136504436)

	45-493, gnl\|bosTau2\|chr10 (29975195-29974753)
	45-493, gnl\|Hg17\|chr14 (49155612-49155168)
	45-493, gnl\|Mm7\|chr12 (67124666-67124241)

	csk (0.844476)
	col (0.780031)
	ova (0.774793)
	sto (0.719295)
	ssp (0.677599)
	nje (0.66368)
	mga (0.64082)
	tes (0.623441)
	pgl (0.592417)
	med (0.58126)
	nlu (0.575043)
	pty (0.570858)
	nca (0.547495)
	fty (0.527519)
	ill (0.526778)
	sin (0.524843)
	mcp (0.511945)
	eye (0.511509)
	nmm (0.398406)
	ute (0.398353)
	cmu (0.372787)
	sag (0.36543)
	rec (0.346141)
	duo (0.345602)
	sme (0.305437)
	eli (0.303628)
	jej (0.296765)
	lnt (0.284616)
	lyg (0.266205)
	cov (0.264306)
	eru (0.240096)
	jca (0.22792)
	spc (0.226732)
	nms (0.213858)
	nbm (0.198649)
	fcc (0.197785)
	aor (0.195274)
	nep (0.183925)
	mgm (0.180343)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	tbr (0.154178)
	cli (0.152812)
	cag (0.151194)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	cst (0.140036)
	hlv (0.139256)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	cly (0.120642)
	ecc (0.115035)