Ss1.1-rmcp26c_n9.5
|
ACAGCCTTTCACCCACAGCCTGCAGGAGCCTCTCTCCGTGAAGCCACTGCACGAGACCCT
GAGAGCAACCTCAGGACGCAGGGACCATGAAGAGCCTGCTCCTTCTCTCCGTCCTGGCTG
CCTTGGCCGTGGCAGCCCTGTGCTATGAATCTCATGAGAGCTTGGAATCCTATGAAATCA
ATCCCTTCCTTAACAGGAGAAATGCTAATACCTTTATATCGCCACAGCAGAGATGGAGAG
CGAAAGCCCAAGAGAGAATCCGAGAACTCAACAAGCCTCCCTATGAGTTAAACCGGGAAG
CTTGCGATGACTACAAACTTTGCGAACGCTATGCCATGGTTTATGGATACAACGCCGCCT
ACAATCGTTATTTCCGGCAGCGCCCAGGGGCCAAATAAGACCAGAAAAAGTGTCTCTCTC
CAGACCCCAGTGGCTGGTTTTGTAATCCCTTGCAGTAGCATCACTGAACTATATAGACAC
AGACAAATTGCTTGTTTCTTCAATGTCCTTGTCTGGCCTCATCCCCTTTCCTGACCCAGG
TTGATAAGGAATGAAAGTGCCATGGAGTGAAGGTCAAAAGAGTTAAACATGTGATTATTC
CATAATAAATTTCTTGGAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAATGCCG
GGATATTTCAATTTCAGCCCACCTAGCCCAGAACAAGAGATTCTGCTAATTATGTTATAA
TGTAGATTAGAAGCCATAGTGAGAGGAAGAATAAACCTTAGAAGATGTTCACTCAGCTTT
AATTTGTCTAGACTCTACCTTGGGATCAATGAATGATTGCTTCCTATTAGGTGTTTTCTA
GAATTTTCAAACATCGTAGATGATCAATCATATGATTTTCCTGCTCCCAAATTTTAACAG
CTCCTAAATTCTTTCCATGTGGATTCCAGACTCTGTATCCTGGCTTATGTCCCTCTCCTA
ATGTTATCATTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACAGCCTTTCACCCACAGCCTGCAGGAGCCTCTCTCCGTGAAGCCACTGCACGAGACCCT
GAGAGCAACCTCAGGACGCAGGGACCATGAAGAGCCTGCTCCTTCTCTCCGTCCTGGCTG
CCTTGGCCGTGGCAGCCCTGTGCTATGAATCTCATGAGAGCTTGGAATCCTATGAAATCA
ATCCCTTCCTTAACAGGAGAAATGCTAATACCTTTATATCGCCACAGCAGAGATGGAGAG
CGAAAGCCCAAGAGAGAATCCGAGAACTCAACAAGCCTCCCTATGAGTTAAACCGGGAAG
CTTGCGATGACTACAAACTTTGCGAACGCTATGCCATGGTTTATGGATACAACGCCGCCT
ACAATCGTTATTTCCGGCAGCGCCCAGGGGCCAAATAAGACCAGAAAAAGTGTCTCTCTC
CAGACCCCAGTGGCTGGTTTTGTAATCCCTTGCAGTAGCATCACTGAACTATATAGACAC
AGACAAATTGCTTGTTTCTTCAATGTCCTTGTCTGGCCTCATCCCCTTTCCTGACCCAGG
TTGATAAGGAATGAAAGTGCCATGGAGTGAAGGTCAAAAGAGTTAAACATGTGATTATTC
CATAATAAATTTCTTGGAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAGGGAAAATGCCG
GGATATTTCAATTTCAGCCCACCTAGCCCAGAACAAGAGATTCTGCTAATTATGTTATAA
TGTAGATTAGAAGCCATAGTGAGAGGAAGAATAAACCTTAGAAGATGTTCACTCAGCTTT
AATTTGTCTAGACTCTACCTTGGGATCAATGAATGATTGCTTCCTATTAGGTGTTTTCTA
GAATTTTCAAACATCGTAGATGATCAATCATATGATTTTCCTGCTCCCAAATTTTAACAG
CTCCTAAATTCTTTCCATGTGGATTCCAGACTCTGTATCCTGGCTTATGTCCCTCTCCTA
ATGTTATCATTC
|
|
1-147, gnl|bosTau2|chr5 (57350888-57351026) |
|
1-147, gnl|canFam2|chr27 (34753997-34753636) |
|
1-147, gnl|dasNov1|scaffold_284501 (365-5) |
|
1-147, gnl|echTel1|scaffold_304799 (6629-6988) |
|
1-147, gnl|hg17|chr12 (14929754-14930115) |
|
1-147, gnl|Hg17|chr12 (14930076-14929932) |
|
1-147, gnl|mm7|chr6 (136900048-136900419) |
|
1-147, gnl|Mm7|chr6 (136900379-136900226) |
|
1-147, gnl|monDom2|scaffold_31 (11126967-11126593) |
|
1-147, gnl|oryCun1|scaffold_111622 (4379-4013) |
|
1-147, gnl|panTro1|chrUn_random (41197954-41198315) |
|
1-147, gnl|rheMac2|chr11 (15259381-15259742) |
|
1-147, gnl|rn3|chr4 (174158788-174159153) |
| |
|
255-970, gnl|bosTau2|chr5 (57354073-57354794) |
|
255-970, gnl|Hg17|chr12 (14926483-14925868) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-147, gnl|bosTau2|chr5 (57350888-57351026) |
|
1-147, gnl|canFam2|chr27 (34753997-34753636) |
|
1-147, gnl|dasNov1|scaffold_284501 (365-5) |
|
1-147, gnl|echTel1|scaffold_304799 (6629-6988) |
|
1-147, gnl|hg17|chr12 (14929754-14930115) |
|
1-147, gnl|Hg17|chr12 (14930076-14929932) |
|
1-147, gnl|mm7|chr6 (136900048-136900419) |
|
1-147, gnl|Mm7|chr6 (136900379-136900226) |
|
1-147, gnl|monDom2|scaffold_31 (11126967-11126593) |
|
1-147, gnl|oryCun1|scaffold_111622 (4379-4013) |
|
1-147, gnl|panTro1|chrUn_random (41197954-41198315) |
|
1-147, gnl|rheMac2|chr11 (15259381-15259742) |
|
1-147, gnl|rn3|chr4 (174158788-174159153) |
| |
|
255-970, gnl|bosTau2|chr5 (57354073-57354794) |
|
255-970, gnl|Hg17|chr12 (14926483-14925868) |
|
jca (8.88889) |
|
gul (4.43971) |
|
nmm (4.38247) |
|
nlu (4.21698) |
|
aor (4.10076) |
|
mcp (3.92491) |
|
nca (3.28497) |
|
nep (2.75887) |
|
med (2.55754) |
|
pty (1.998) |
|
mgp (1.84544) |
|
hlv (1.81033) |
|
nms (1.71086) |
|
nco (1.61734) |
|
mga (1.44185) |
|
lyg (1.19792) |
|
cga (1.11638) |
|
sug (0.891039) |
|
fat (0.884564) |
|
rec (0.865351) |
|
lnt (0.853849) |
|
sag (0.730861) |
|
ill (0.702371) |
|
vin (0.665115) |
|
mas (0.630915) |
|
hea (0.613497) |
|
spc (0.566829) |
|
pla (0.534688) |
|
fbs (0.526039) |
|
ova (0.516529) |
|
pro (0.512033) |
|
eye (0.511509) |
|
bla (0.497389) |
|
tra (0.492368) |
|
bfe (0.449573) |
|
ute (0.398353) |
|
ret (0.3862) |
|
sin (0.349895) |
|
cki (0.330469) |
|
sme (0.305437) |
|
liv (0.292569) |
|
lin (0.291206) |
|
csk (0.281492) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
ese (0.253004) |
|
cly (0.241284) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
fli (0.202881) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
fty (0.17584) |
|
ton (0.1755) |
|
cje (0.165235) |
|
csp (0.161186) |
|
ski (0.146735) |
|
thg (0.126791) |
|
eru (0.120048) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
jca (8.88889) |
|
gul (4.43971) |
|
nmm (4.38247) |
|
nlu (4.21698) |
|
aor (4.10076) |
|
mcp (3.92491) |
|
nca (3.28497) |
|
nep (2.75887) |
|
med (2.55754) |
|
pty (1.998) |
|
mgp (1.84544) |
|
hlv (1.81033) |
|
nms (1.71086) |
|
nco (1.61734) |
|
mga (1.44185) |
|
lyg (1.19792) |
|
cga (1.11638) |
|
sug (0.891039) |
|
fat (0.884564) |
|
rec (0.865351) |
|
lnt (0.853849) |
|
sag (0.730861) |
|
ill (0.702371) |
|
vin (0.665115) |
|
mas (0.630915) |
|
hea (0.613497) |
|
spc (0.566829) |
|
pla (0.534688) |
|
fbs (0.526039) |
|
ova (0.516529) |
|
pro (0.512033) |
|
eye (0.511509) |
|
bla (0.497389) |
|
tra (0.492368) |
|
bfe (0.449573) |
|
ute (0.398353) |
|
ret (0.3862) |
|
sin (0.349895) |
|
cki (0.330469) |
|
sme (0.305437) |
|
liv (0.292569) |
|
lin (0.291206) |
|
csk (0.281492) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
ese (0.253004) |
|
cly (0.241284) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
fli (0.202881) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
fty (0.17584) |
|
ton (0.1755) |
|
cje (0.165235) |
|
csp (0.161186) |
|
ski (0.146735) |
|
thg (0.126791) |
|
eru (0.120048) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
