Non-Coding RNA Search

Ss1.1-rmcp28c_b13.5

Sequence:


               
               TCGGCGGCGCGGTGCAGGAAGACCAGGAGCAGGGTGTGCACGTCGCCCTCGGCCGAGTGC
GCTGCGCTGGGCTCTGCCTGGAAGTAGCGGCGGAAGAGGCTGCCCAGGCTGTAACCCTTG
CGGCCCTGGGCCCGGGTGCCGTGGCTGTGGGCACGGTCCAGGCTCCGCAGCGCCGGCAGC
GTGTCCAGGCAGACAGTGTCCTGGGGCAGGTGGGCGCCCAGGCGCCAGAGCTCCGTGCGC
AGCAAGGGGAAGTCGTAGTCGAAGCCGTTGTGGGCCACAAGGCACACGGGGCCCTCCTGG
CGGCTCAGGAAGGCCTGCAGCGTCCGCACCACCGCGCCGTCGAAGCCGGCCTTCCGGCAC
CTGGCCAGGCCCTCGCTGCTCAGGCCGGTGATCTCACTGGCCTTGGCGGTGAAGGGGTGC
TCCGGGCTCATGCAGAGCGTGAGCTTGTCCAGGACCCGGGGCAGCACGGGGGCGCCAGAC
TCATCCCGCTCCGGGTTCTCCAGCGAGGAGCGGTGGACGGCAAACAGGGAGATCTCGGCG
ATCTCGGGGTCTACGCTGGGGAGCCCGGTGGCTTCCAGGTCCAGAAAGACGAAGGTCTCA
GCCCGAGGCGCCTCGGCCATGGTGACGTTCTCACAGGGACGGCGAAGCCTCCTGCTGGGG
CGGGCGCAGGCCGGCTTCCTGGGCTGCTGGGCACCTGTCTGCACGGGCCGCTCCAGGCGG
CCTTTAATCTGTGGCTGTGGCCCGCCCCCCGCCGCCTGTTGGGCAACGAGGAGGCCTGAG
GCCGCAGGACCTGCGCGGCTGGCTCACCGCCCCCTCGCTCGCTCGCTCGCAGCCACTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGCGGCGCGGTGCAGGAAGACCAGGAGCAGGGTGTGCACGTCGCCCTCGGCCGAGTGC
GCTGCGCTGGGCTCTGCCTGGAAGTAGCGGCGGAAGAGGCTGCCCAGGCTGTAACCCTTG
CGGCCCTGGGCCCGGGTGCCGTGGCTGTGGGCACGGTCCAGGCTCCGCAGCGCCGGCAGC
GTGTCCAGGCAGACAGTGTCCTGGGGCAGGTGGGCGCCCAGGCGCCAGAGCTCCGTGCGC
AGCAAGGGGAAGTCGTAGTCGAAGCCGTTGTGGGCCACAAGGCACACGGGGCCCTCCTGG
CGGCTCAGGAAGGCCTGCAGCGTCCGCACCACCGCGCCGTCGAAGCCGGCCTTCCGGCAC
CTGGCCAGGCCCTCGCTGCTCAGGCCGGTGATCTCACTGGCCTTGGCGGTGAAGGGGTGC
TCCGGGCTCATGCAGAGCGTGAGCTTGTCCAGGACCCGGGGCAGCACGGGGGCGCCAGAC
TCATCCCGCTCCGGGTTCTCCAGCGAGGAGCGGTGGACGGCAAACAGGGAGATCTCGGCG
ATCTCGGGGTCTACGCTGGGGAGCCCGGTGGCTTCCAGGTCCAGAAAGACGAAGGTCTCA
GCCCGAGGCGCCTCGGCCATGGTGACGTTCTCACAGGGACGGCGAAGCCTCCTGCTGGGG
CGGGCGCAGGCCGGCTTCCTGGGCTGCTGGGCACCTGTCTGCACGGGCCGCTCCAGGCGG
CCTTTAATCTGTGGCTGTGGCCCGCCCCCCGCCGCCTGTTGGGCAACGAGGAGGCCTGAG
GCCGCAGGACCTGCGCGGCTGGCTCACCGCCCCCTCGCTCGCTCGCTCGCAGCCACTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57112953|ref|XP_549356.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57112953|ref|XP_549356.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               263-462, - strand, RNAz p=0.995591
               

               
               666-782, + strand, RNAz p=0.95087
               

               
               666-795, + strand, RNAz p=0.958739

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-462, - strand, RNAz p=0.995591
               

               
               666-782, + strand, RNAz p=0.95087
               

               
               666-795, + strand, RNAz p=0.958739

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF319573, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF319573, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               144-657, gnl|bosTau2|chrX (13811871-13811357)
               

               
               144-657, gnl|Hg17|chrX (152231259-152231772)
               

               
               144-657, gnl|Mm7|chrX (68820812-68821325)
               


               
               666-824, gnl|bosTau2|chrX (13810681-13810522)
               

               
               666-824, gnl|canFam2|chrX (124308104-124308353)
               

               
               666-824, gnl|echTel1|scaffold_290320 (4856-4634)
               

               
               666-824, gnl|hg17|chrX (152232142-152232440)
               

               
               666-824, gnl|Hg17|chrX (152232325-152232489)
               

               
               666-824, gnl|loxAfr1|scaffold_35213 (9632-9382)
               

               
               666-824, gnl|mm7|chrX (68821814-68822072)
               

               
               666-824, gnl|Mm7|chrX (68821957-68822121)
               

               
               666-824, gnl|oryCun1|scaffold_153602 (2886-3128)
               

               
               666-824, gnl|panTro1|chrX (157509602-157509899)
               

               
               666-824, gnl|rheMac2|chrX (151553177-151553475)
               

               
               666-824, gnl|rn3|chrX (159409357-159409615)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-657, gnl|bosTau2|chrX (13811871-13811357)
               

               
               144-657, gnl|Hg17|chrX (152231259-152231772)
               

               
               144-657, gnl|Mm7|chrX (68820812-68821325)
               


               
               666-824, gnl|bosTau2|chrX (13810681-13810522)
               

               
               666-824, gnl|canFam2|chrX (124308104-124308353)
               

               
               666-824, gnl|echTel1|scaffold_290320 (4856-4634)
               

               
               666-824, gnl|hg17|chrX (152232142-152232440)
               

               
               666-824, gnl|Hg17|chrX (152232325-152232489)
               

               
               666-824, gnl|loxAfr1|scaffold_35213 (9632-9382)
               

               
               666-824, gnl|mm7|chrX (68821814-68822072)
               

               
               666-824, gnl|Mm7|chrX (68821957-68822121)
               

               
               666-824, gnl|oryCun1|scaffold_153602 (2886-3128)
               

               
               666-824, gnl|panTro1|chrX (157509602-157509899)
               

               
               666-824, gnl|rheMac2|chrX (151553177-151553475)
               

               
               666-824, gnl|rn3|chrX (159409357-159409615)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cag (0.151194)

	263-462, - strand, RNAz p=0.995591
	666-782, + strand, RNAz p=0.95087
	666-795, + strand, RNAz p=0.958739

	144-657, gnl\|bosTau2\|chrX (13811871-13811357)
	144-657, gnl\|Hg17\|chrX (152231259-152231772)
	144-657, gnl\|Mm7\|chrX (68820812-68821325)

	666-824, gnl\|bosTau2\|chrX (13810681-13810522)
	666-824, gnl\|canFam2\|chrX (124308104-124308353)
	666-824, gnl\|echTel1\|scaffold_290320 (4856-4634)
	666-824, gnl\|hg17\|chrX (152232142-152232440)
	666-824, gnl\|Hg17\|chrX (152232325-152232489)
	666-824, gnl\|loxAfr1\|scaffold_35213 (9632-9382)
	666-824, gnl\|mm7\|chrX (68821814-68822072)
	666-824, gnl\|Mm7\|chrX (68821957-68822121)
	666-824, gnl\|oryCun1\|scaffold_153602 (2886-3128)
	666-824, gnl\|panTro1\|chrX (157509602-157509899)
	666-824, gnl\|rheMac2\|chrX (151553177-151553475)
	666-824, gnl\|rn3\|chrX (159409357-159409615)