Non-Coding RNA Search

Ss1.1-rmcp28c_j13.5

Sequence:


               
               CCATTCCTGGGGGAGACCCCGAACGTTCTCCCTGGATGCTGTCCCGCCAGACCACTCCCC
TGGGGCTTCTCGCTCGGTTGCCCCTCTCCCCTCGCAGCGGCCCCCACGGTCCAGAGGTCT
CTGCAGCCAAGGCCCGCCCCACACTTGGCTCCAGTCACCAGTGTGAGAGAGGAGGGTGCT
GGCACCAGGATCTGGCCAGAGGTGGAGATGATCTGTGCACGGCTGGACTCTGGATTCGGC
GCTGTTTGGAGCAGGTTGGCCAGCTGGGCCTCCCTTTCCTCTGCTGGACTGGGGGTAGGC
TGCGGAGGGGGAGCAGAAGCCCCTCTTAACCTGTGGTTGCCATGGTGCTGAGGGACTCAT
TCCCAGGGCTGGCTGGGATCCCCTAAACCCTTCCTGGGAGAAAACTGGAAGCAACCCCGC
CCTTCCTCCCTGCACTAACTAGCTTTGAGGATGGCACTGAAGAGCTTTGGGAGGAACGCA
CCTCCCTTGTGACTCCCCCATCAACCATTAAAGTTATTTAACAGCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATTCCTGGGGGAGACCCCGAACGTTCTCCCTGGATGCTGTCCCGCCAGACCACTCCCC
TGGGGCTTCTCGCTCGGTTGCCCCTCTCCCCTCGCAGCGGCCCCCACGGTCCAGAGGTCT
CTGCAGCCAAGGCCCGCCCCACACTTGGCTCCAGTCACCAGTGTGAGAGAGGAGGGTGCT
GGCACCAGGATCTGGCCAGAGGTGGAGATGATCTGTGCACGGCTGGACTCTGGATTCGGC
GCTGTTTGGAGCAGGTTGGCCAGCTGGGCCTCCCTTTCCTCTGCTGGACTGGGGGTAGGC
TGCGGAGGGGGAGCAGAAGCCCCTCTTAACCTGTGGTTGCCATGGTGCTGAGGGACTCAT
TCCCAGGGCTGGCTGGGATCCCCTAAACCCTTCCTGGGAGAAAACTGGAAGCAACCCCGC
CCTTCCTCCCTGCACTAACTAGCTTTGAGGATGGCACTGAAGAGCTTTGGGAGGAACGCA
CCTCCCTTGTGACTCCCCCATCAACCATTAAAGTTATTTAACAGCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               245-361, + strand, RNAz p=0.634554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-361, + strand, RNAz p=0.634554

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001015055, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001015055, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-526, gnl|bosTau2|chr11 (7897622-7898141)
               

               
               6-526, gnl|Hg17|chr2 (74565182-74564665)
               

               
               6-526, gnl|Mm7|chr6 (83177494-83178010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-526, gnl|bosTau2|chr11 (7897622-7898141)
               

               
               6-526, gnl|Hg17|chr2 (74565182-74564665)
               

               
               6-526, gnl|Mm7|chr6 (83177494-83178010)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eep (0.122564)

	6-526, gnl\|bosTau2\|chr11 (7897622-7898141)
	6-526, gnl\|Hg17\|chr2 (74565182-74564665)
	6-526, gnl\|Mm7\|chr6 (83177494-83178010)