Non-Coding RNA Search

Ss1.1-rmcp28c_o24.5

Sequence:


               
               GGCAGCTAAAGCAGTGGACGGATACGTGAAGCCACAGATCAAGCAAGTGGTCCCTGAGTT
TGTGAGCGCCTCTTCAGACTCTGCCGGGGGCAATGCCACCTACATGGACCAGGCCCCCTC
CCCAGCCGTGTGCCCCCAGGCTCATTACAGCATATACCCACAGAACCCGGACCCCGTCCT
CGACCAGGATGGAGAATTCGACCTGGATGAGACCATGGATGTAGCCCGGCATGTGGAGGA
ACTCTTACGCCGCCCGATGGACAGTCTGGACCCCCGCCTCTCCCCGCCTGCTGGTCTCTT
CGCTTCTACCAGGGGCTCACTCTCCTGAACGTCAGAACCCCACGCTTTTCCTTGGAAGCC
ATGCTCCACGTGAAGGGTTCATATTCGTTGCGATTTTCTGTTTGTATTGCTGTGCACCTG
AATGCTTTTGCAGGCAGCACGTGTATGCGTGCATACGTGCGTGTATGGCTTTGTGCACGA
GGTGTGCCTGCCTTGCCTTCCTGGTCCCTGGTCTCCAGATGGAGGCATTCCAGGAGCCCA
CTGGGTCGGTCTCTTGTGGCAAAGACTCAGCTGCTTCTGTAATTGCACCTACTCAAAGCA
GGCAAACCGATTCTTGCCAGAGCCTTGGTCTGCTCAGCAGCTGTTTGAATGAAATTATTC
AAGAAGGGAAAGGAGACAGGTCATGTCTCCAAGCTCCAGTCTTACTCCTGAGTTAGGCGC
TTTGCCTCCCTAGTGTATGTGCGTCTGCTTTGCAATATTCATGTTGGTCTCTTGATTCTT
CTCCTCAGGAGGGAGGCTGGGGTTCACTTTGGAGAGAGAGTTTATGCTTTATCTAATGAG
TATAGACTCCAGACTCTTCTGGAATTGAGAGCTGAGCTAGGCCATGGTCATGTGACTAAC
ACAGTAGAAATGGATCGTTTGTGTTGGGCCTGGCAGAGCGGCTCTGAGAATGGAGTTTCT
TAGCCTCTGATGGGAGGTCCCAGCTTCAAGTCTATGACGCCGCATCTCCTGTTCCTGCTC
TTTCCATCGACTCTCCCCTTCCCCTGTCTGGCCCCAGCCTTCTTTCCTTGTCTCTCTCTG
TCTGCAACCTTGTTTACTCCTGGGAGAGATGGGAAAGGGGGAAGGGACAGGTCTAGGACA
TGGGGGTGAACAGGGGGCCTGGGACTTGCAGGGTTGATCCCCTCCCCTGCAGCAAAAAAA
ACCCCCTCGAAACAAGAGGCAGCATCAGCGGCCTGCTGCACGCCTGTGGAGTCTGGAGTT
CGGGGTAAAAGCTGATTGCCATCCACTCTGCTGGGGGCTGGAACCTGGAACAGGCCTCTT
TGCAGTTGCGTAACGGGCTGTGGTCTGAGAAAGCCTGGCTCCCAGCCTCACCGGCTCCTC
CCTCTGAAGCTGCCCCACTGCGGCCAGGGGCATCTGACAGTGGAGGATCGGGAGTCCCAG
GCTGAAACATCTCTCAAGGAAGGTGGGGATGAGAAGGGGGATTCTTTTGTACTTTGTACA
TAGGCCACACATTTGTGTAAACAGTGTTTTTGCATAAAAATATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCTAAAGCAGTGGACGGATACGTGAAGCCACAGATCAAGCAAGTGGTCCCTGAGTT
TGTGAGCGCCTCTTCAGACTCTGCCGGGGGCAATGCCACCTACATGGACCAGGCCCCCTC
CCCAGCCGTGTGCCCCCAGGCTCATTACAGCATATACCCACAGAACCCGGACCCCGTCCT
CGACCAGGATGGAGAATTCGACCTGGATGAGACCATGGATGTAGCCCGGCATGTGGAGGA
ACTCTTACGCCGCCCGATGGACAGTCTGGACCCCCGCCTCTCCCCGCCTGCTGGTCTCTT
CGCTTCTACCAGGGGCTCACTCTCCTGAACGTCAGAACCCCACGCTTTTCCTTGGAAGCC
ATGCTCCACGTGAAGGGTTCATATTCGTTGCGATTTTCTGTTTGTATTGCTGTGCACCTG
AATGCTTTTGCAGGCAGCACGTGTATGCGTGCATACGTGCGTGTATGGCTTTGTGCACGA
GGTGTGCCTGCCTTGCCTTCCTGGTCCCTGGTCTCCAGATGGAGGCATTCCAGGAGCCCA
CTGGGTCGGTCTCTTGTGGCAAAGACTCAGCTGCTTCTGTAATTGCACCTACTCAAAGCA
GGCAAACCGATTCTTGCCAGAGCCTTGGTCTGCTCAGCAGCTGTTTGAATGAAATTATTC
AAGAAGGGAAAGGAGACAGGTCATGTCTCCAAGCTCCAGTCTTACTCCTGAGTTAGGCGC
TTTGCCTCCCTAGTGTATGTGCGTCTGCTTTGCAATATTCATGTTGGTCTCTTGATTCTT
CTCCTCAGGAGGGAGGCTGGGGTTCACTTTGGAGAGAGAGTTTATGCTTTATCTAATGAG
TATAGACTCCAGACTCTTCTGGAATTGAGAGCTGAGCTAGGCCATGGTCATGTGACTAAC
ACAGTAGAAATGGATCGTTTGTGTTGGGCCTGGCAGAGCGGCTCTGAGAATGGAGTTTCT
TAGCCTCTGATGGGAGGTCCCAGCTTCAAGTCTATGACGCCGCATCTCCTGTTCCTGCTC
TTTCCATCGACTCTCCCCTTCCCCTGTCTGGCCCCAGCCTTCTTTCCTTGTCTCTCTCTG
TCTGCAACCTTGTTTACTCCTGGGAGAGATGGGAAAGGGGGAAGGGACAGGTCTAGGACA
TGGGGGTGAACAGGGGGCCTGGGACTTGCAGGGTTGATCCCCTCCCCTGCAGCAAAAAAA
ACCCCCTCGAAACAAGAGGCAGCATCAGCGGCCTGCTGCACGCCTGTGGAGTCTGGAGTT
CGGGGTAAAAGCTGATTGCCATCCACTCTGCTGGGGGCTGGAACCTGGAACAGGCCTCTT
TGCAGTTGCGTAACGGGCTGTGGTCTGAGAAAGCCTGGCTCCCAGCCTCACCGGCTCCTC
CCTCTGAAGCTGCCCCACTGCGGCCAGGGGCATCTGACAGTGGAGGATCGGGAGTCCCAG
GCTGAAACATCTCTCAAGGAAGGTGGGGATGAGAAGGGGGATTCTTTTGTACTTTGTACA
TAGGCCACACATTTGTGTAAACAGTGTTTTTGCATAAAAATATTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               392-603, + strand, RNAz p=0.942681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-603, + strand, RNAz p=0.942681

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               408-492, + strand, RNAmicro p=0.999426

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               408-492, + strand, RNAmicro p=0.999426

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003152, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003152, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               157-1142, gnl|bosTau2|chr19 (36807019-36807999)
               

               
               157-1142, gnl|Hg17|chr17 (37716042-37717090)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-1142, gnl|bosTau2|chr19 (36807019-36807999)
               

               
               157-1142, gnl|Hg17|chr17 (37716042-37717090)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               mcp (0.682594)
               

               
               hyp (0.285673)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.682594)
               

               
               hyp (0.285673)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	157-1142, gnl\|bosTau2\|chr19 (36807019-36807999)
	157-1142, gnl\|Hg17\|chr17 (37716042-37717090)

	mcp (0.682594)
	hyp (0.285673)
	ill (0.175593)
	fbs (0.175346)
	fhi (0.169578)
	csp (0.161186)
	lnt (0.142308)
	che (0.136314)
	ute (0.132784)
	cbl (0.114797)
	jca (0.11396)