Non-Coding RNA Search

Ss1.1-rmcp29c_e16.5

Sequence:


               
               CGGCCAAGCGGACAGCCAGGACTCCAAGATGGCGTCAGTTGTACCGCTGAAGGACAGGAG
GCTGCTGGAGGTCAAATTAGGGGAGCTGCCAAGCTGGATACTGATGCGGGATTTCACCCC
TTCGGGCATTGCCGGAGCATTTCAAAGAGGTTACTACCGCTATTACAACAAGTACGTCAA
CGTGAAGAAAGGCAGCGTCGCCGGGCTGTCTATGGTGCTGGCAGCTTACGTGGTTTTCAA
CTACTGCCGTTCTTACAAGGAGCTCAAACATGAGCGGCTGCGCAAATACCACTGAAGATG
GCGCCCTCTGCATTCCTGACCGGGACCTTTGCCTGGCACCCTGAATCCTTTCTTATCCTA
ACGGAGCGTTAACACCCAATAAAAGATGATTGGTACAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACTGCTTTCAGCAGCAGAGACCGAATCCTTGTTTAC
CAACAGAGAACTGGTGCAGTTATGCAGCCACTGAAGTACATGAGAGATACACATACTGAC
ACGGAGAGACCCTGACTGTTCTAAGAAAAAAGATTATATAGGGCATTGTACATAGTAGGG
CCCTAAGATACATAGGGTCTTGTGCTTATGTGAATAAAAGTTTGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCAAGCGGACAGCCAGGACTCCAAGATGGCGTCAGTTGTACCGCTGAAGGACAGGAG
GCTGCTGGAGGTCAAATTAGGGGAGCTGCCAAGCTGGATACTGATGCGGGATTTCACCCC
TTCGGGCATTGCCGGAGCATTTCAAAGAGGTTACTACCGCTATTACAACAAGTACGTCAA
CGTGAAGAAAGGCAGCGTCGCCGGGCTGTCTATGGTGCTGGCAGCTTACGTGGTTTTCAA
CTACTGCCGTTCTTACAAGGAGCTCAAACATGAGCGGCTGCGCAAATACCACTGAAGATG
GCGCCCTCTGCATTCCTGACCGGGACCTTTGCCTGGCACCCTGAATCCTTTCTTATCCTA
ACGGAGCGTTAACACCCAATAAAAGATGATTGGTACAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACTGCTTTCAGCAGCAGAGACCGAATCCTTGTTTAC
CAACAGAGAACTGGTGCAGTTATGCAGCCACTGAAGTACATGAGAGATACACATACTGAC
ACGGAGAGACCCTGACTGTTCTAAGAAAAAAGATTATATAGGGCATTGTACATAGTAGGG
CCCTAAGATACATAGGGTCTTGTGCTTATGTGAATAAAAGTTTGGAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               ATPK_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               ATPK_PIG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-272, gnl|bosTau2|chr13 (33048191-33048452)
               

               
               7-272, gnl|Hg17|chr9 (108678146-108678408)
               

               
               7-272, gnl|Mm7|chr2 (18714518-18714265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-272, gnl|bosTau2|chr13 (33048191-33048452)
               

               
               7-272, gnl|Hg17|chr9 (108678146-108678408)
               

               
               7-272, gnl|Mm7|chr2 (18714518-18714265)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               nms (1.71086)
               

               
               ton (1.404)
               

               
               mas (1.26183)
               

               
               col (0.975039)
               

               
               hlv (0.974795)
               

               
               lnt (0.711541)
               

               
               ebs (0.709807)
               

               
               fbs (0.701385)
               

               
               eye (0.682012)
               

               
               ute (0.663922)
               

               
               fcc (0.593354)
               

               
               eje (0.593003)
               

               
               nmm (0.531209)
               

               
               ill (0.526778)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               fli (0.405762)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (1.71086)
               

               
               ton (1.404)
               

               
               mas (1.26183)
               

               
               col (0.975039)
               

               
               hlv (0.974795)
               

               
               lnt (0.711541)
               

               
               ebs (0.709807)
               

               
               fbs (0.701385)
               

               
               eye (0.682012)
               

               
               ute (0.663922)
               

               
               fcc (0.593354)
               

               
               eje (0.593003)
               

               
               nmm (0.531209)
               

               
               ill (0.526778)
               

               
               ece (0.45861)
               

               
               cag (0.453583)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               fli (0.405762)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               fce (0.271592)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	7-272, gnl\|bosTau2\|chr13 (33048191-33048452)
	7-272, gnl\|Hg17\|chr9 (108678146-108678408)
	7-272, gnl\|Mm7\|chr2 (18714518-18714265)

	nms (1.71086)
	ton (1.404)
	mas (1.26183)
	col (0.975039)
	hlv (0.974795)
	lnt (0.711541)
	ebs (0.709807)
	fbs (0.701385)
	eye (0.682012)
	ute (0.663922)
	fcc (0.593354)
	eje (0.593003)
	nmm (0.531209)
	ill (0.526778)
	ece (0.45861)
	cag (0.453583)
	hyp (0.42851)
	amn (0.417711)
	nca (0.410621)
	fli (0.405762)
	cov (0.396458)
	jej (0.395687)
	elu (0.385356)
	ecc (0.345105)
	nco (0.323468)
	cli (0.305623)
	fce (0.271592)
	eep (0.245128)
	med (0.232504)
	nep (0.183925)
	sto (0.179824)
	fty (0.17584)
	duo (0.172801)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	cki (0.165235)
	csp (0.161186)
	eli (0.151814)
	bfe (0.149858)
	fat (0.147427)
	pty (0.142714)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	ese (0.126502)
	eru (0.120048)
	clu (0.119646)
	jca (0.11396)
	nbm (0.0993246)