Non-Coding RNA Search

Ss1.1-rmcp30c_g15.5

Sequence:


               
               GACTCCCGGAACCGGCCCCCGTATACGGTTGCAGCTGATAAATCGACACGTAATGAGTTC
CGGAGGTTCATGGAGAAGCATCCAGATGCTTACGATTACAACAAGGCTCAGGTGCCAGGG
CCACTGACAGCAGAAATGGAAGCCCGGCAGGCCACTCGGAAAAGGGAGCAGAAGGCAGCC
CGGCGGCACCGGGAGGAGCAGCAGCGGAAGCGGCAGGAGCAGGACAAGCAGGAGCAAGAA
GAGCAGAGGCGATTTGCTGCCCTCAGTGACCGAGAGAAGAGAGCTCTGGCTGCAGAGCGC
CGACTAGCTGCCCAGGTGGGAGCCCCCACCCCGCAGATCCCTGACCCTGCAGTTGGCAAC
GTACGACGCTGCTGGAGCTGTGGGACATCCCTCCAAGGCCTCATTCCCTTTCACTACCTC
GACTTCTCTTTCTGCTCCACACGCTGCCTCCAGGAGCATCGCCGTCAGGCCGGGAAGCCC
TCTTCCTGATCTCTGGCAGCTCCACCTGGGGCCACTGCTAGGCCCTGGGCAGGCACATTC
ACACTGGCCCTAGGTTTCTTCTTCCCCACAAAACCGGAGGGCATTTGGAAGATCAAGGTG
AGGGACGCTGGGGAAGCAGGGCAAAGAGGGCCACAGAGGTGTGTGGAGCTGGTACTGTCT
CCGGAACTTTAATCACAATAAAGTTTGGCAAGGAAGCTGCCCTTGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCCCGGAACCGGCCCCCGTATACGGTTGCAGCTGATAAATCGACACGTAATGAGTTC
CGGAGGTTCATGGAGAAGCATCCAGATGCTTACGATTACAACAAGGCTCAGGTGCCAGGG
CCACTGACAGCAGAAATGGAAGCCCGGCAGGCCACTCGGAAAAGGGAGCAGAAGGCAGCC
CGGCGGCACCGGGAGGAGCAGCAGCGGAAGCGGCAGGAGCAGGACAAGCAGGAGCAAGAA
GAGCAGAGGCGATTTGCTGCCCTCAGTGACCGAGAGAAGAGAGCTCTGGCTGCAGAGCGC
CGACTAGCTGCCCAGGTGGGAGCCCCCACCCCGCAGATCCCTGACCCTGCAGTTGGCAAC
GTACGACGCTGCTGGAGCTGTGGGACATCCCTCCAAGGCCTCATTCCCTTTCACTACCTC
GACTTCTCTTTCTGCTCCACACGCTGCCTCCAGGAGCATCGCCGTCAGGCCGGGAAGCCC
TCTTCCTGATCTCTGGCAGCTCCACCTGGGGCCACTGCTAGGCCCTGGGCAGGCACATTC
ACACTGGCCCTAGGTTTCTTCTTCCCCACAAAACCGGAGGGCATTTGGAAGATCAAGGTG
AGGGACGCTGGGGAAGCAGGGCAAAGAGGGCCACAGAGGTGTGTGGAGCTGGTACTGTCT
CCGGAACTTTAATCACAATAAAGTTTGGCAAGGAAGCTGCCCTTGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840807|ref|XP_584553.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840807|ref|XP_584553.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               444-601, + strand, RNAz p=0.942123

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-601, + strand, RNAz p=0.942123

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK023206, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK023206, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               109-279, gnl|bosTau2|chr2 (65177375-65177545)
               

               
               109-279, gnl|canFam2|chr37 (28782195-28782617)
               

               
               109-279, gnl|dasNov1|scaffold_7517 (38429-38840)
               

               
               109-279, gnl|echTel1|scaffold_308242 (116741-117156)
               

               
               109-279, gnl|fr1|chrUn (26039001-26038656)
               

               
               109-279, gnl|galGal2|chr7 (23008427-23008093)
               

               
               109-279, gnl|hg17|chr2 (219925667-219926075)
               

               
               109-279, gnl|Hg17|chr2 (219925932-219926102)
               

               
               109-279, gnl|mm7|chr1 (75421484-75421869)
               

               
               109-279, gnl|Mm7|chr1 (75421726-75421896)
               

               
               109-279, gnl|monDom2|scaffold_39 (1322194-1321832)
               

               
               109-279, gnl|oryCun1|scaffold_198528 (108777-109181)
               

               
               109-279, gnl|panTro1|chr13 (110088596-110089004)
               

               
               109-279, gnl|rheMac2|chr12 (83089570-83089978)
               

               
               109-279, gnl|rn3|chr9 (74627302-74627684)
               

               
               109-279, gnl|tetNig1|chr2 (12528095-12527738)
               

               
               109-279, gnl|xenTro1|scaffold_31 (3034887-3034433)
               


               
               365-708, gnl|bosTau2|chr2 (65177995-65178340)
               

               
               365-708, gnl|Hg17|chr2 (219926548-219926891)
               

               
               365-708, gnl|Mm7|chr1 (75422315-75422651)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-279, gnl|bosTau2|chr2 (65177375-65177545)
               

               
               109-279, gnl|canFam2|chr37 (28782195-28782617)
               

               
               109-279, gnl|dasNov1|scaffold_7517 (38429-38840)
               

               
               109-279, gnl|echTel1|scaffold_308242 (116741-117156)
               

               
               109-279, gnl|fr1|chrUn (26039001-26038656)
               

               
               109-279, gnl|galGal2|chr7 (23008427-23008093)
               

               
               109-279, gnl|hg17|chr2 (219925667-219926075)
               

               
               109-279, gnl|Hg17|chr2 (219925932-219926102)
               

               
               109-279, gnl|mm7|chr1 (75421484-75421869)
               

               
               109-279, gnl|Mm7|chr1 (75421726-75421896)
               

               
               109-279, gnl|monDom2|scaffold_39 (1322194-1321832)
               

               
               109-279, gnl|oryCun1|scaffold_198528 (108777-109181)
               

               
               109-279, gnl|panTro1|chr13 (110088596-110089004)
               

               
               109-279, gnl|rheMac2|chr12 (83089570-83089978)
               

               
               109-279, gnl|rn3|chr9 (74627302-74627684)
               

               
               109-279, gnl|tetNig1|chr2 (12528095-12527738)
               

               
               109-279, gnl|xenTro1|scaffold_31 (3034887-3034433)
               


               
               365-708, gnl|bosTau2|chr2 (65177995-65178340)
               

               
               365-708, gnl|Hg17|chr2 (219926548-219926891)
               

               
               365-708, gnl|Mm7|chr1 (75422315-75422651)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mcp (0.341297)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	109-279, gnl\|bosTau2\|chr2 (65177375-65177545)
	109-279, gnl\|canFam2\|chr37 (28782195-28782617)
	109-279, gnl\|dasNov1\|scaffold_7517 (38429-38840)
	109-279, gnl\|echTel1\|scaffold_308242 (116741-117156)
	109-279, gnl\|fr1\|chrUn (26039001-26038656)
	109-279, gnl\|galGal2\|chr7 (23008427-23008093)
	109-279, gnl\|hg17\|chr2 (219925667-219926075)
	109-279, gnl\|Hg17\|chr2 (219925932-219926102)
	109-279, gnl\|mm7\|chr1 (75421484-75421869)
	109-279, gnl\|Mm7\|chr1 (75421726-75421896)
	109-279, gnl\|monDom2\|scaffold_39 (1322194-1321832)
	109-279, gnl\|oryCun1\|scaffold_198528 (108777-109181)
	109-279, gnl\|panTro1\|chr13 (110088596-110089004)
	109-279, gnl\|rheMac2\|chr12 (83089570-83089978)
	109-279, gnl\|rn3\|chr9 (74627302-74627684)
	109-279, gnl\|tetNig1\|chr2 (12528095-12527738)
	109-279, gnl\|xenTro1\|scaffold_31 (3034887-3034433)

	365-708, gnl\|bosTau2\|chr2 (65177995-65178340)
	365-708, gnl\|Hg17\|chr2 (219926548-219926891)
	365-708, gnl\|Mm7\|chr1 (75422315-75422651)

	mcp (0.341297)
	col (0.195008)
	eye (0.170503)
	pty (0.142714)
	ebs (0.118301)
	med (0.116252)