Non-Coding RNA Search

Ss1.1-rmcp32c_g18.5

Sequence:


               
               AGTGTGACCCCAGCTGCAGCCATGAGGTGTCTCCTGCTCACCCTGGGCCTGGCCCTCCTG
TGTGGCGTTCAGGCCGTCGAAGTCACCCCGATCATGACGGAGCTGGACACCCAAAAGGTG
GCCGGGACATGGCACACCGTGGCCATGGCGGTCAGCGACGTCTCCCTGCTGGACGCCAAG
AGCAGCCCCCTGAAGGCGTATGTGGAGGGGCTGAAGCCCACCCCCGAGGGCGACCTGGAG
ATCCTCCTGCAGAAGCGGGAGAATGACAAGTGTGCCCAGGAGGTGCTCCTTGCAAAAAAA
ACCGACATCCCTGCCGTGTTCAAGATCAATGCCCTGGACGAGAACCAGCTCTTCCTGCTG
GACACTGACTACGACAGCCACCTGCTCCTCTGCATGGAGAACAGCGCCAGCCCCGAGCAC
AGCCTGGTCTGCCAGAGCCTGGCCAGGACCCTGGAGGTGGACGACCAGATCAGGGAGAAA
TTTGAAGATGCCCTCAAGACGCTGTCTGTGCCCATGCGGATCCTGCCAGCCCAGCTGGAA
GAGCAGTGCCGCGTCTAGGGGAGCTCCCGCCATCACCTCCGGGGGGTCCCTCTGGGGAGA
CAAGATATCACCCCACCTCCCCATCAGCGGAATCAGGAGGGCCTGGGACCAAGGTCACCC
CTCCTGGGACCCGGACCCCTGGGACCCGCCTGGCATCTCCTGCTCTGGGCCCTTCCTCCT
TCAGCAATAAAAGCATAAACCAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTGACCCCAGCTGCAGCCATGAGGTGTCTCCTGCTCACCCTGGGCCTGGCCCTCCTG
TGTGGCGTTCAGGCCGTCGAAGTCACCCCGATCATGACGGAGCTGGACACCCAAAAGGTG
GCCGGGACATGGCACACCGTGGCCATGGCGGTCAGCGACGTCTCCCTGCTGGACGCCAAG
AGCAGCCCCCTGAAGGCGTATGTGGAGGGGCTGAAGCCCACCCCCGAGGGCGACCTGGAG
ATCCTCCTGCAGAAGCGGGAGAATGACAAGTGTGCCCAGGAGGTGCTCCTTGCAAAAAAA
ACCGACATCCCTGCCGTGTTCAAGATCAATGCCCTGGACGAGAACCAGCTCTTCCTGCTG
GACACTGACTACGACAGCCACCTGCTCCTCTGCATGGAGAACAGCGCCAGCCCCGAGCAC
AGCCTGGTCTGCCAGAGCCTGGCCAGGACCCTGGAGGTGGACGACCAGATCAGGGAGAAA
TTTGAAGATGCCCTCAAGACGCTGTCTGTGCCCATGCGGATCCTGCCAGCCCAGCTGGAA
GAGCAGTGCCGCGTCTAGGGGAGCTCCCGCCATCACCTCCGGGGGGTCCCTCTGGGGAGA
CAAGATATCACCCCACCTCCCCATCAGCGGAATCAGGAGGGCCTGGGACCAAGGTCACCC
CTCCTGGGACCCGGACCCCTGGGACCCGCCTGGCATCTCCTGCTCTGGGCCCTTCCTCCT
TCAGCAATAAAAGCATAAACCAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11513708|pdb|1EXS|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11513708|pdb|1EXS|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               585-745, - strand, RNAz p=0.99999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               585-745, - strand, RNAz p=0.99999

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               116-254, gnl|bosTau2|chr11 (85736249-85736387)
               

               
               116-254, gnl|Hg17|chr9 (135680083-135680221)
               


               
               331-442, gnl|bosTau2|chr11 (85738483-85738594)
               

               
               331-442, gnl|canFam2|chr9 (53024980-53024871)
               

               
               331-442, gnl|hg17|chr9 (135676899-135677008)
               

               
               331-442, gnl|Hg17|chr9 (135682028-135682145)
               

               
               331-442, gnl|panTro1|chr11 (120554966-120555075)
               

               
               331-442, gnl|rheMac2|chr15 (2764557-2764448)
               


               
               585-745, gnl|bosTau2|chr11 (85740042-85740205)
               

               
               585-745, gnl|Hg17|chr9 (135710496-135710648)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-254, gnl|bosTau2|chr11 (85736249-85736387)
               

               
               116-254, gnl|Hg17|chr9 (135680083-135680221)
               


               
               331-442, gnl|bosTau2|chr11 (85738483-85738594)
               

               
               331-442, gnl|canFam2|chr9 (53024980-53024871)
               

               
               331-442, gnl|hg17|chr9 (135676899-135677008)
               

               
               331-442, gnl|Hg17|chr9 (135682028-135682145)
               

               
               331-442, gnl|panTro1|chr11 (120554966-120555075)
               

               
               331-442, gnl|rheMac2|chr15 (2764557-2764448)
               


               
               585-745, gnl|bosTau2|chr11 (85740042-85740205)
               

               
               585-745, gnl|Hg17|chr9 (135710496-135710648)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cga (126.43)
               

               
               mcp (70.3072)
               

               
               mgm (0.360685)
               

               
               mga (0.160205)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (126.43)
               

               
               mcp (70.3072)
               

               
               mgm (0.360685)
               

               
               mga (0.160205)
               

               
               cov (0.132153)

	116-254, gnl\|bosTau2\|chr11 (85736249-85736387)
	116-254, gnl\|Hg17\|chr9 (135680083-135680221)

	331-442, gnl\|bosTau2\|chr11 (85738483-85738594)
	331-442, gnl\|canFam2\|chr9 (53024980-53024871)
	331-442, gnl\|hg17\|chr9 (135676899-135677008)
	331-442, gnl\|Hg17\|chr9 (135682028-135682145)
	331-442, gnl\|panTro1\|chr11 (120554966-120555075)
	331-442, gnl\|rheMac2\|chr15 (2764557-2764448)

	585-745, gnl\|bosTau2\|chr11 (85740042-85740205)
	585-745, gnl\|Hg17\|chr9 (135710496-135710648)

	cga (126.43)
	mcp (70.3072)
	mgm (0.360685)
	mga (0.160205)
	cov (0.132153)