Non-Coding RNA Search

Ss1.1-rmcp35c_h10.5

Sequence:


               
               GTGAAAGTGTCCCTGGACCCTCTGCCCTTCTTTGTCATCACCATGATCAAGATCATGCTC
ATTAACTCGTTCGGTGCCATCCTGCAGGGCAGCCTGTTTGGCCTGGCCGGCCTCCTGCCC
GCCAGCTACACAGCCCCCATCATGAGTGGCCAGGGCCTGGCAGGCTTCTTCGCCTCCGTG
GCCATGATCTGCGCCATCGCCAGTGGCTCGGAGCTTTCGGAAAGTGCCTTCGGCTATTTT
ATCACAGCCTGTGCGGTTATTATTTTGACCATCATCTGTTATCTGGGCCTGCCGCGGCTG
GAATTTTACCGCTACTACCAGCAACTCAAGCTTGAAGGGCCTGGGGAGCAGGAGACCAAG
CTGGACCTCATTACTAAAGGAGAGGAGTCAAAAGCAGGCCAAGAGGAGCTCAGAGTTTCT
GCCTCCAACTCTCAGCCCAGCAACAAAAGCCACTCTGTCCGTGCCATCCTCAGAAGTATC
TTAGTCCCGGCTCTCTCCGTCTGCTTCGTCTTCACGGTCACCATTGGGGTGTTTCCTGCC
GTGGCTGCCGAGGTCAAGTCCAGCATTGCGGACACCACCAGCCCCTGGAATAACTACTTC
ATTCCTGTGTCCTGTTTCTTGACTTTCAACATCTTTGACTGGCTGGGCCGGAGCCTCACA
GCCGTCACCATGTGGCCTGGGAAGGACAGCCTCTGGCTGCCGATCCTGGTCCTGGCCCGA
CTGGCCTTCGTGCCTCTGCTGCTGCTGTGTAATGTCCAGCCCCGCCACTACTTGCCCATG
GTCTTTGACCACGACGCCTTGTACATCTTCTTCATGGCTGCCTTCGCCTTCTCCAACGGC
TACCTCGCCAGTCTCTGCATGTGCTTCGGGCCCAAGAAGGTGACGCCGGCCGAGGCAGAG
ACCGCTGGAGCCATCATGGCCTTCTTTCTGTCTCTGGGCTTGGCGCTGGGGGCCGTCTTC
TCCTTCCTGTTCCGGGCGATCGTGTGACCATGGGTGGCTGGAAGGACGGCCGGCAAGGAC
AGCACCGGCCACCAGCTCCCACCCGCTTCTTCTTCAGGGACAGGCAGGGGTCATCTGGAG
GTTTCCCTTCCAGCTGACTCCTGCTGCTTTCACACGGCCTGTGCTGGGCCTGGCACCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAAGTGTCCCTGGACCCTCTGCCCTTCTTTGTCATCACCATGATCAAGATCATGCTC
ATTAACTCGTTCGGTGCCATCCTGCAGGGCAGCCTGTTTGGCCTGGCCGGCCTCCTGCCC
GCCAGCTACACAGCCCCCATCATGAGTGGCCAGGGCCTGGCAGGCTTCTTCGCCTCCGTG
GCCATGATCTGCGCCATCGCCAGTGGCTCGGAGCTTTCGGAAAGTGCCTTCGGCTATTTT
ATCACAGCCTGTGCGGTTATTATTTTGACCATCATCTGTTATCTGGGCCTGCCGCGGCTG
GAATTTTACCGCTACTACCAGCAACTCAAGCTTGAAGGGCCTGGGGAGCAGGAGACCAAG
CTGGACCTCATTACTAAAGGAGAGGAGTCAAAAGCAGGCCAAGAGGAGCTCAGAGTTTCT
GCCTCCAACTCTCAGCCCAGCAACAAAAGCCACTCTGTCCGTGCCATCCTCAGAAGTATC
TTAGTCCCGGCTCTCTCCGTCTGCTTCGTCTTCACGGTCACCATTGGGGTGTTTCCTGCC
GTGGCTGCCGAGGTCAAGTCCAGCATTGCGGACACCACCAGCCCCTGGAATAACTACTTC
ATTCCTGTGTCCTGTTTCTTGACTTTCAACATCTTTGACTGGCTGGGCCGGAGCCTCACA
GCCGTCACCATGTGGCCTGGGAAGGACAGCCTCTGGCTGCCGATCCTGGTCCTGGCCCGA
CTGGCCTTCGTGCCTCTGCTGCTGCTGTGTAATGTCCAGCCCCGCCACTACTTGCCCATG
GTCTTTGACCACGACGCCTTGTACATCTTCTTCATGGCTGCCTTCGCCTTCTCCAACGGC
TACCTCGCCAGTCTCTGCATGTGCTTCGGGCCCAAGAAGGTGACGCCGGCCGAGGCAGAG
ACCGCTGGAGCCATCATGGCCTTCTTTCTGTCTCTGGGCTTGGCGCTGGGGGCCGTCTTC
TCCTTCCTGTTCCGGGCGATCGTGTGACCATGGGTGGCTGGAAGGACGGCCGGCAAGGAC
AGCACCGGCCACCAGCTCCCACCCGCTTCTTCTTCAGGGACAGGCAGGGGTCATCTGGAG
GTTTCCCTTCCAGCTGACTCCTGCTGCTTTCACACGGCCTGTGCTGGGCCTGGCACCCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12655065|gb|AAH01382.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12655065|gb|AAH01382.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               70-204, - strand, RNAz p=0.967964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-204, - strand, RNAz p=0.967964

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               70-204, gnl|bosTau2|chr23 (18176190-18176324)
               

               
               70-204, gnl|canFam2|chr12 (15644332-15644494)
               

               
               70-204, gnl|danRer3|chr13 (45586314-45586460)
               

               
               70-204, gnl|dasNov1|scaffold_197868 (960-797)
               

               
               70-204, gnl|echTel1|scaffold_253220 (5587-5749)
               

               
               70-204, gnl|fr1|chrUn (192597578-192597731)
               

               
               70-204, gnl|galGal2|chr3 (26604577-26604418)
               

               
               70-204, gnl|hg17|chr6 (44306063-44306225)
               

               
               70-204, gnl|Hg17|chr6 (44306064-44306198)
               

               
               70-204, gnl|loxAfr1|scaffold_58205 (10477-10616)
               

               
               70-204, gnl|mm7|chr17 (43718953-43718795)
               

               
               70-204, gnl|Mm7|chr17 (43718950-43718816)
               

               
               70-204, gnl|monDom2|scaffold_0 (196593743-196593582)
               

               
               70-204, gnl|oryCun1|scaffold_200653 (43250-43099)
               

               
               70-204, gnl|panTro1|chr5 (44913773-44913935)
               

               
               70-204, gnl|rheMac2|chr4 (44149332-44149494)
               

               
               70-204, gnl|rn3|chr9 (11007014-11007170)
               

               
               70-204, gnl|tetNig1|chrUn_random (9358944-9359090)
               


               
               675-876, gnl|bosTau2|chr23 (18178293-18178494)
               

               
               675-876, gnl|Hg17|chr6 (44308521-44308722)
               

               
               675-876, gnl|Mm7|chr17 (43715710-43715497)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-204, gnl|bosTau2|chr23 (18176190-18176324)
               

               
               70-204, gnl|canFam2|chr12 (15644332-15644494)
               

               
               70-204, gnl|danRer3|chr13 (45586314-45586460)
               

               
               70-204, gnl|dasNov1|scaffold_197868 (960-797)
               

               
               70-204, gnl|echTel1|scaffold_253220 (5587-5749)
               

               
               70-204, gnl|fr1|chrUn (192597578-192597731)
               

               
               70-204, gnl|galGal2|chr3 (26604577-26604418)
               

               
               70-204, gnl|hg17|chr6 (44306063-44306225)
               

               
               70-204, gnl|Hg17|chr6 (44306064-44306198)
               

               
               70-204, gnl|loxAfr1|scaffold_58205 (10477-10616)
               

               
               70-204, gnl|mm7|chr17 (43718953-43718795)
               

               
               70-204, gnl|Mm7|chr17 (43718950-43718816)
               

               
               70-204, gnl|monDom2|scaffold_0 (196593743-196593582)
               

               
               70-204, gnl|oryCun1|scaffold_200653 (43250-43099)
               

               
               70-204, gnl|panTro1|chr5 (44913773-44913935)
               

               
               70-204, gnl|rheMac2|chr4 (44149332-44149494)
               

               
               70-204, gnl|rn3|chr9 (11007014-11007170)
               

               
               70-204, gnl|tetNig1|chrUn_random (9358944-9359090)
               


               
               675-876, gnl|bosTau2|chr23 (18178293-18178494)
               

               
               675-876, gnl|Hg17|chr6 (44308521-44308722)
               

               
               675-876, gnl|Mm7|chr17 (43715710-43715497)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	70-204, gnl\|bosTau2\|chr23 (18176190-18176324)
	70-204, gnl\|canFam2\|chr12 (15644332-15644494)
	70-204, gnl\|danRer3\|chr13 (45586314-45586460)
	70-204, gnl\|dasNov1\|scaffold_197868 (960-797)
	70-204, gnl\|echTel1\|scaffold_253220 (5587-5749)
	70-204, gnl\|fr1\|chrUn (192597578-192597731)
	70-204, gnl\|galGal2\|chr3 (26604577-26604418)
	70-204, gnl\|hg17\|chr6 (44306063-44306225)
	70-204, gnl\|Hg17\|chr6 (44306064-44306198)
	70-204, gnl\|loxAfr1\|scaffold_58205 (10477-10616)
	70-204, gnl\|mm7\|chr17 (43718953-43718795)
	70-204, gnl\|Mm7\|chr17 (43718950-43718816)
	70-204, gnl\|monDom2\|scaffold_0 (196593743-196593582)
	70-204, gnl\|oryCun1\|scaffold_200653 (43250-43099)
	70-204, gnl\|panTro1\|chr5 (44913773-44913935)
	70-204, gnl\|rheMac2\|chr4 (44149332-44149494)
	70-204, gnl\|rn3\|chr9 (11007014-11007170)
	70-204, gnl\|tetNig1\|chrUn_random (9358944-9359090)

	675-876, gnl\|bosTau2\|chr23 (18178293-18178494)
	675-876, gnl\|Hg17\|chr6 (44308521-44308722)
	675-876, gnl\|Mm7\|chr17 (43715710-43715497)