Non-Coding RNA Search

Ss1.1-rmed01c_c1.5

Sequence:


               
               GTTAAATGTACACATCGTATTTGAAGGAGAGAAGGAATTTCATCAAAATGTGAAATTATG
GGGTGTGATTGATGTAAAGCGAAGCTATGTAACTATGACGGCAACAAAGATTGAGATCAC
CATGAGAAAAGCTGAACCTATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCCAAAAACCA
GGAAAAACAAAAAGAAGATACAGCAGAATGAGTTGAGGAGGAAAAAAAACAGTTATTGCC
TGTTTCCGAATTGTTAATGTGTGGTCAAGTGGTGACTTGCTGCTGTACTCTTGTTTTCTT
GTTGTTGTTGTTGTTATCGAATCTGGCATTTCAGGGTCTGTAGTAGGTTGAAGCCAAAGT
CATTTTATCTTTTTGTGCCTCCCATATCCCTTTTGAGTTACCTAAGATTGATGTTCATTT
CTCCTCACTATTAGAACTGTAGTCGTGTCCTATACTTGAAGAAGCTAGAAAATAGCTCAT
AACGGTTACAGTATTTCTTAGTGTGATATTTTGTTAATCTGAGAAATGTAAAAGAGCATT
TGTTTTTACATCTTTCTTCATCTAATTAGTAAAGCAAGATGGAATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAATGTACACATCGTATTTGAAGGAGAGAAGGAATTTCATCAAAATGTGAAATTATG
GGGTGTGATTGATGTAAAGCGAAGCTATGTAACTATGACGGCAACAAAGATTGAGATCAC
CATGAGAAAAGCTGAACCTATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCCAAAAACCA
GGAAAAACAAAAAGAAGATACAGCAGAATGAGTTGAGGAGGAAAAAAAACAGTTATTGCC
TGTTTCCGAATTGTTAATGTGTGGTCAAGTGGTGACTTGCTGCTGTACTCTTGTTTTCTT
GTTGTTGTTGTTGTTATCGAATCTGGCATTTCAGGGTCTGTAGTAGGTTGAAGCCAAAGT
CATTTTATCTTTTTGTGCCTCCCATATCCCTTTTGAGTTACCTAAGATTGATGTTCATTT
CTCCTCACTATTAGAACTGTAGTCGTGTCCTATACTTGAAGAAGCTAGAAAATAGCTCAT
AACGGTTACAGTATTTCTTAGTGTGATATTTTGTTAATCTGAGAAATGTAAAAGAGCATT
TGTTTTTACATCTTTCTTCATCTAATTAGTAAAGCAAGATGGAATGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7688953|gb|AAF67616.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7688953|gb|AAF67616.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               184-302, - strand, RNAz p=0.97457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-302, - strand, RNAz p=0.97457

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-588, gnl|bosTau2|chr29 (2206866-2206343)
               

               
               65-588, gnl|Hg17|chr11 (89575367-89574840)
               

               
               65-588, gnl|Mm7|chr9 (18165042-18165542)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-588, gnl|bosTau2|chr29 (2206866-2206343)
               

               
               65-588, gnl|Hg17|chr11 (89575367-89574840)
               

               
               65-588, gnl|Mm7|chr9 (18165042-18165542)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               vin (0.332557)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	65-588, gnl\|bosTau2\|chr29 (2206866-2206343)
	65-588, gnl\|Hg17\|chr11 (89575367-89574840)
	65-588, gnl\|Mm7\|chr9 (18165042-18165542)