Non-Coding RNA Search

Ss1.1-rmed01c_l3.5

Sequence:


               
               TTCTGATGACAGAAAGAAGAAGGTCCTACAGCATAGGGGAAGCAATGGAGGAACTTATGG
GACCTGATGGACAAAAACGGGCCAATATGGATCCAGAAGAACGAATGTTAGCAGCTGCTT
CAGCTTTTACCCGTATGTGTGCAGAGCAGGGTGAGGGAGATGTGAGGAGAGAAGCCCAGG
CAATCCAATATGATCCCTACAGTAAAGCTTCAGTAACCCCAGGAAGGAGACCTGCTCTTC
CTGTGCAGCTGCATTACCCACATGTAGAAAGCAGTGCCCCTTCAGAAGCAGTCTCAGAGG
CCTCCCAAAGATTCCGAAAGCCGGTGATGAAGAGAAAGGTACTACGTAGAAAGCCAGGTG
GGGAAGTTTTAGTGACGGATGAGTCGATTATCAGTGAATCAGAATTTGGTACAGAAAGTG
ACATGAATGTCTGGGACTTAAGACAAAGGCTGATGAATCTGCAGTTCCAGGAAGACAGGG
AATCCTCAGTTGATATTTCACAAAAATTTAGTCTACCCCATGAATACCAAGGAGTTTCTC
AAGATCAGCTCGTTTGCTATCTACAAAGAGAAGAAATGGGACCTCAAGCTTATGAACAAG
ACCTGATTGTTGCCAGCCGACCCAAGTCCTTTATTCTCCCAAGGCTGGACCAGTTAAGCC
GAAACCGTGGCAAGATAGACCGGGTAGCCCGATATTTTGAATATAAACGAGACTGGGACT
CAATGAGGTTACCTGGTGAAGATCATAGGAAGGAATTACGCTGGGGTGTCCGAGAACAGA
TGCTTTGTCGGGCAGAACCCCAACCCAAGCCTCAGCACATATATGTTCCAAACAATTACC
TAGTACCAACTGAGAAGAAACGATCTGCCCTTCGTTGGGGTGTTCGTTGTGACCTTGCAA
ATGGTGTAATGCCCAAGAAGCTTCCCTTCCCTCTTTCTCCTTCTTAGGTCTTTTATTTAT
TTTTTTAAACCTGTCTCTCCTTTCACAGGATTGTTTGCAATTACTTAAATAGAAAGATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGATGACAGAAAGAAGAAGGTCCTACAGCATAGGGGAAGCAATGGAGGAACTTATGG
GACCTGATGGACAAAAACGGGCCAATATGGATCCAGAAGAACGAATGTTAGCAGCTGCTT
CAGCTTTTACCCGTATGTGTGCAGAGCAGGGTGAGGGAGATGTGAGGAGAGAAGCCCAGG
CAATCCAATATGATCCCTACAGTAAAGCTTCAGTAACCCCAGGAAGGAGACCTGCTCTTC
CTGTGCAGCTGCATTACCCACATGTAGAAAGCAGTGCCCCTTCAGAAGCAGTCTCAGAGG
CCTCCCAAAGATTCCGAAAGCCGGTGATGAAGAGAAAGGTACTACGTAGAAAGCCAGGTG
GGGAAGTTTTAGTGACGGATGAGTCGATTATCAGTGAATCAGAATTTGGTACAGAAAGTG
ACATGAATGTCTGGGACTTAAGACAAAGGCTGATGAATCTGCAGTTCCAGGAAGACAGGG
AATCCTCAGTTGATATTTCACAAAAATTTAGTCTACCCCATGAATACCAAGGAGTTTCTC
AAGATCAGCTCGTTTGCTATCTACAAAGAGAAGAAATGGGACCTCAAGCTTATGAACAAG
ACCTGATTGTTGCCAGCCGACCCAAGTCCTTTATTCTCCCAAGGCTGGACCAGTTAAGCC
GAAACCGTGGCAAGATAGACCGGGTAGCCCGATATTTTGAATATAAACGAGACTGGGACT
CAATGAGGTTACCTGGTGAAGATCATAGGAAGGAATTACGCTGGGGTGTCCGAGAACAGA
TGCTTTGTCGGGCAGAACCCCAACCCAAGCCTCAGCACATATATGTTCCAAACAATTACC
TAGTACCAACTGAGAAGAAACGATCTGCCCTTCGTTGGGGTGTTCGTTGTGACCTTGCAA
ATGGTGTAATGCCCAAGAAGCTTCCCTTCCCTCTTTCTCCTTCTTAGGTCTTTTATTTAT
TTTTTTAAACCTGTCTCTCCTTTCACAGGATTGTTTGCAATTACTTAAATAGAAAGATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96M11_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96M11_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-1004, gnl|bosTau2|chr29 (22142564-22141577)
               

               
               18-1004, gnl|Hg17|chr11 (125274447-125275412)
               

               
               18-1004, gnl|Mm7|chr9 (35456908-35455932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-1004, gnl|bosTau2|chr29 (22142564-22141577)
               

               
               18-1004, gnl|Hg17|chr11 (125274447-125275412)
               

               
               18-1004, gnl|Mm7|chr9 (35456908-35455932)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	18-1004, gnl\|bosTau2\|chr29 (22142564-22141577)
	18-1004, gnl\|Hg17\|chr11 (125274447-125275412)
	18-1004, gnl\|Mm7\|chr9 (35456908-35455932)

	tes (0.207814)
	fbs (0.175346)
	fhi (0.169578)
	fat (0.147427)
	med (0.116252)
	cty (0.10408)