Ss1.1-rmed02c_i19.5
|
GCTCTTGTCTAATCTGCAGCCATGCCTTCCAAGGGTCCTCTACAGTCGGTGCAGGTCTTC
GGACGCAAGAAGACAGCCACGGCCGTGGCGCACTGCTTGCAGCGCCGCGCGGTGAGGAGC
TCTTGTCTAATCTGCAGCCATGCCTTCCAAGGGTCCTCTACAGTCGGTGCAGGTCTTCGG
ACGCAAGAAGACAGCCACGGCCGTGGCGCACTGCAAACGAGGTAACGGCCTCATCAAAGT
GAACGGGCGACCCCTGGAGATGATCGAGCCGCGCACGCTGCAATACAAGCTACTGGAACC
TGTTCTGCTTTTGGGCAAGGAACGATTTGCTGGTGTGGACATCCGAGTCCGGGTGAAGGG
TGGTGGTCACGTGGCCCAGATTTACGCAATCCGCCAGTCCATCTCCAAAGCCTTGGTGGC
CTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCA
ATATGACCGGACCCTGCTGGTAGCTGATCCTCGTCGCTGTGAATCCAAAAAGTTTGGAGG
TCCTGGCGCCCGTGCCCGCTACCAGAAATCTTACCGATAAGCCCATCGTGATGATCAGCG
TTCAGCTTTATAATAAAAACATTTGTGGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTCTTGTCTAATCTGCAGCCATGCCTTCCAAGGGTCCTCTACAGTCGGTGCAGGTCTTC
GGACGCAAGAAGACAGCCACGGCCGTGGCGCACTGCTTGCAGCGCCGCGCGGTGAGGAGC
TCTTGTCTAATCTGCAGCCATGCCTTCCAAGGGTCCTCTACAGTCGGTGCAGGTCTTCGG
ACGCAAGAAGACAGCCACGGCCGTGGCGCACTGCAAACGAGGTAACGGCCTCATCAAAGT
GAACGGGCGACCCCTGGAGATGATCGAGCCGCGCACGCTGCAATACAAGCTACTGGAACC
TGTTCTGCTTTTGGGCAAGGAACGATTTGCTGGTGTGGACATCCGAGTCCGGGTGAAGGG
TGGTGGTCACGTGGCCCAGATTTACGCAATCCGCCAGTCCATCTCCAAAGCCTTGGTGGC
CTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCA
ATATGACCGGACCCTGCTGGTAGCTGATCCTCGTCGCTGTGAATCCAAAAAGTTTGGAGG
TCCTGGCGCCCGTGCCCGCTACCAGAAATCTTACCGATAAGCCCATCGTGATGATCAGCG
TTCAGCTTTATAATAAAAACATTTGTGGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|55649139|ref|XP_512651.1| |
Protein identifier
|
gi|55649139|ref|XP_512651.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cag (5.89658) |
|
mcp (5.2901) |
|
cly (4.70503) |
|
ill (4.38982) |
|
med (4.30133) |
|
col (4.29017) |
|
nca (4.24309) |
|
lnt (4.12694) |
|
csp (4.02966) |
|
duo (3.97443) |
|
cga (3.90734) |
|
nje (3.81616) |
|
ecc (3.79616) |
|
eje (3.65685) |
|
fty (3.51679) |
|
nlu (3.45026) |
|
ese (3.28906) |
|
cov (3.17167) |
|
thg (3.16977) |
|
elu (3.08285) |
|
hea (3.06748) |
|
hlv (3.06364) |
|
ece (2.98097) |
|
eep (2.94154) |
|
pgl (2.8436) |
|
nep (2.75887) |
|
mas (2.73396) |
|
nmm (2.65604) |
|
fli (2.63745) |
|
nco (2.58774) |
|
ssp (2.57487) |
|
pty (2.56886) |
|
eru (2.40096) |
|
cut (2.20901) |
|
cje (1.98282) |
|
cli (1.83374) |
|
ova (1.80785) |
|
jej (1.78059) |
|
ton (1.755) |
|
nms (1.71086) |
|
ebs (1.65622) |
|
hyp (1.5712) |
|
cst (1.5404) |
|
cki (1.48711) |
|
jca (1.48148) |
|
ute (1.46063) |
|
fbs (1.40277) |
|
eye (1.36402) |
|
che (1.36314) |
|
fce (1.35796) |
|
nbm (1.29122) |
|
eli (1.0627) |
|
pro (1.02407) |
|
fat (0.884564) |
|
sin (0.874738) |
|
bla (0.87043) |
|
fhi (0.847889) |
|
fcc (0.791139) |
|
rec (0.692281) |
|
mgp (0.692042) |
|
sag (0.548145) |
|
mgm (0.541028) |
|
sto (0.539471) |
|
csk (0.422238) |
|
amn (0.417711) |
|
cmu (0.372787) |
|
clu (0.358938) |
|
gul (0.355177) |
|
spc (0.340097) |
|
vin (0.332557) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
lin (0.291206) |
|
pla (0.267344) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
tes (0.207814) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
mga (0.160205) |
|
isp (0.150376) |
|
ski (0.146735) |
|
spl (0.143184) |
|
sug (0.127291) |
|
cag (5.89658) |
|
mcp (5.2901) |
|
cly (4.70503) |
|
ill (4.38982) |
|
med (4.30133) |
|
col (4.29017) |
|
nca (4.24309) |
|
lnt (4.12694) |
|
csp (4.02966) |
|
duo (3.97443) |
|
cga (3.90734) |
|
nje (3.81616) |
|
ecc (3.79616) |
|
eje (3.65685) |
|
fty (3.51679) |
|
nlu (3.45026) |
|
ese (3.28906) |
|
cov (3.17167) |
|
thg (3.16977) |
|
elu (3.08285) |
|
hea (3.06748) |
|
hlv (3.06364) |
|
ece (2.98097) |
|
eep (2.94154) |
|
pgl (2.8436) |
|
nep (2.75887) |
|
mas (2.73396) |
|
nmm (2.65604) |
|
fli (2.63745) |
|
nco (2.58774) |
|
ssp (2.57487) |
|
pty (2.56886) |
|
eru (2.40096) |
|
cut (2.20901) |
|
cje (1.98282) |
|
cli (1.83374) |
|
ova (1.80785) |
|
jej (1.78059) |
|
ton (1.755) |
|
nms (1.71086) |
|
ebs (1.65622) |
|
hyp (1.5712) |
|
cst (1.5404) |
|
cki (1.48711) |
|
jca (1.48148) |
|
ute (1.46063) |
|
fbs (1.40277) |
|
eye (1.36402) |
|
che (1.36314) |
|
fce (1.35796) |
|
nbm (1.29122) |
|
eli (1.0627) |
|
pro (1.02407) |
|
fat (0.884564) |
|
sin (0.874738) |
|
bla (0.87043) |
|
fhi (0.847889) |
|
fcc (0.791139) |
|
rec (0.692281) |
|
mgp (0.692042) |
|
sag (0.548145) |
|
mgm (0.541028) |
|
sto (0.539471) |
|
csk (0.422238) |
|
amn (0.417711) |
|
cmu (0.372787) |
|
clu (0.358938) |
|
gul (0.355177) |
|
spc (0.340097) |
|
vin (0.332557) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
lin (0.291206) |
|
pla (0.267344) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
tes (0.207814) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
mga (0.160205) |
|
isp (0.150376) |
|
ski (0.146735) |
|
spl (0.143184) |
|
sug (0.127291) |
