Non-Coding RNA Search

Ss1.1-rmed02c_p19.5

Sequence:


               
               CTCAGGGTTCGTAGTCGGATTCGTTAACCACTGCGCCACGACGGGAACTCCGACTTTTCT
CATGTGCATTATGTGTCTGATCTCTTTCAGTATTTGATTTTTGGATTCATGACTTAAATG
GTAGTTCCAACTTTAAATTAAAAAAAAGGGTCTATTTGAGTGTTTAAAAGGAACCAATTG
AAGCAATGCCTACTAAACAGTAGAAATTAACTTTTCTTATCTTAGGCCACCAGGAAACCC
CCCTAGAAGAATGGGTCGAATTAATCATCTCCGTGGCCCTAATCCTCCTCCAATGGCCGG
TGGATGAGGAAGGTAACCTGAAGTCTGCAATTATTTTTTGCAGGGATTTCATTTTGAAAA
TGGCTTCTTAGGAAGGTTTGGTTTAGGAAAACAGAAGTAACAACATTTGGTAATTACTCG
GACATCTTATTTGAAAAAATAATTCTATTTAACCCTTGAAATTTGAATTTGAATCAAAAT
GTCTTTCAAAGAAGGTTTGGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGGTTCGTAGTCGGATTCGTTAACCACTGCGCCACGACGGGAACTCCGACTTTTCT
CATGTGCATTATGTGTCTGATCTCTTTCAGTATTTGATTTTTGGATTCATGACTTAAATG
GTAGTTCCAACTTTAAATTAAAAAAAAGGGTCTATTTGAGTGTTTAAAAGGAACCAATTG
AAGCAATGCCTACTAAACAGTAGAAATTAACTTTTCTTATCTTAGGCCACCAGGAAACCC
CCCTAGAAGAATGGGTCGAATTAATCATCTCCGTGGCCCTAATCCTCCTCCAATGGCCGG
TGGATGAGGAAGGTAACCTGAAGTCTGCAATTATTTTTTGCAGGGATTTCATTTTGAAAA
TGGCTTCTTAGGAAGGTTTGGTTTAGGAAAACAGAAGTAACAACATTTGGTAATTACTCG
GACATCTTATTTGAAAAAATAATTCTATTTAACCCTTGAAATTTGAATTTGAATCAAAAT
GTCTTTCAAAGAAGGTTTGGTCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               273-392, - strand, RNAz p=0.954995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-392, - strand, RNAz p=0.954995

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               70-498, gnl|bosTau2|chr22 (35845642-35846054)
               

               
               70-498, gnl|Hg17|chr3 (53895166-53894709)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-498, gnl|bosTau2|chr22 (35845642-35846054)
               

               
               70-498, gnl|Hg17|chr3 (53895166-53894709)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               med (0.232504)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

	70-498, gnl\|bosTau2\|chr22 (35845642-35846054)
	70-498, gnl\|Hg17\|chr3 (53895166-53894709)